Query= MSMg01no183_m22.b1 MSMg01no183_m22.b1 CHROMAT_FILE:
MSMg01no183_m22.b1 PHD_FILE: MSMg01no183_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:55 2005
(615 letters)
>mm_chr9_117445580_117446590
Length = 1011
Score = 1071 bits (554), Expect = 0.0
Identities = 595/610 (97%), Gaps = 4/610 (0%)
Strand = Plus / Minus
Query: 4 ggaattccttatggtcttccagtgttaaatgaaggagaagctaatctaagtagttttaat 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 ggaattccttatggtcttccagtgttaaatgaaggaggagctaatctaagtagttttaat 620
Query: 64 agacagagtattcatatatgtgcatgctcactctctttctctcttcctgtgcatgtacat 123
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 619 agacagagtattcatatatgtgcatgctca--ctctttctctcttcctgtgcatgtacat 562
Query: 124 gtagcaagcttctcaggggacccaaggagtttaccatgactttgacctgttggaacgctt 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gtagcaagcttctcaggggacccaaggagtctaccatgactttgacctgttggaacgctt 502
Query: 184 gctggcctctgtaggcaaagttaagcatgatgagtggaagctgcacaaagcctttgagca 243
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gctgacctctgtaggcaaagttaagcataatgagtggaagctgcacaaagcctttgagca 442
Query: 244 ctttggtcattcaggtcctcgtgcatgtgacctcttttcccacactctctagcaacctgg 303
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ctttggtcattcaggtcctcacgcatgtgacctcttttcccacattctctagcaacctgg 382
Query: 304 cccgtttgccacaaatctaagctgattctgtctactcctatgtttctcatgaatgatcct 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgtttgccacgaatctaagctgattctgtctactcctatgtttctcatgaatgatcct 322
Query: 364 ctagtgcatttgatgtgattttctagatttctgtgatttttttctgcctctgttttaaaa 423
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagtgcatttcatgtgattttctagatttctgtgatttttttctgcctctgttttaaat 262
Query: 424 gtcactttattaacaaatgtcacttttttttttttttggaaaaacagaatgctaccatta 483
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcactttattaacaaatgtcac--ttttttttttttggaaaaacagaatgctaccatta 204
Query: 484 ggggcttagggcaatggttcaattggtaaagtgcttgctagaaaagcatgcaggcctgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggggcttagggcaatggttcaattggtaaagtgcttgctagaaaagcatgcaggcctgaa 144
Query: 544 tttagatacccttcaccatgtaaaccaccaggcatgctcagttatggtgggacacacctt 603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tttagatgcccttcaccatgtaaaccaccaggcatgctcagttatggtgggacacacctt 84
Query: 604 taatcccagc 613
||||||||||
Sbjct: 83 taatcccagc 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1011
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1001
Effective search space: 605605
Effective search space used: 605605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_m22.g1 MSMg01no183_m22.g1 CHROMAT_FILE:
MSMg01no183_m22.g1 PHD_FILE: MSMg01no183_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:55 2005
(525 letters)
>mm_chr9_117304860_117305784
Length = 925
Score = 893 bits (462), Expect = 0.0
Identities = 510/527 (96%), Gaps = 2/527 (0%)
Strand = Plus / Plus
Query: 1 agtgaagaagaaataacaagagagaaatctcatgataaaaggggaaaggcctgggctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agtgaagaagaaataacaagagagaaatctcatgataaaaggggaaaggccagggctggt 260
Query: 61 ttgggattgaggccctgatgtgtggtgatgttaaaacaaggtaggcagccaataaaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggattgaggccctgatgtgtggtgatgttaaaacaaggtaggcagccaataaaggac 320
Query: 121 aggtagaaacaatgacagggccaccacacacctggggctctattcactccagatgaaatg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtagagacaatgacagggccaccacacacctggggctctattcactccagatgaaatg 380
Query: 181 caatcaatacgggcctggcaagatggctgtcacaaatgcttgacacacaaacatgaggac 240
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatcaatgctggcctggcaagatggctgtcacaaatgcttgacacacaaacatgaggac 440
Query: 241 ctgagttagagacccagggcccttgtaaacagccagcattggtgatccacccatgtaatc 300
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagttagagacccaggacacttgcaaacagccagcattggtgatccacccatgtaatc 500
Query: 301 ctagggctggggatgtgggggcagggggatccttgggcctacnggacaccaaccaaccta 360
||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct: 501 ctagggctgggaatgtgggggcaaggggatccttgggcctacaggacagcaaccaaccta 560
Query: 361 acctttgagccata--ggtgacagactttctctcaaaacccaaagtgctcagcatcctag 418
|||||||||||| | ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 561 acctttgagccacacaggtgatggactttctctcaaaacccaaagtgctcagcctcctag 620
Query: 419 gaataatattcaaggttgacctctgacctctggctttcatgttcatgtggattcatgcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaataatattcaaggttgacctctgacctctggctttcatgttcatgtggattcatgcat 680
Query: 479 acatgcacatacatcctcatgcatatatgcacacacatccttatggg 525
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatgcacatacatcctcatgcatatatgcacacacatccttatggg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
