Query= MSMg01no184_f11.b1 MSMg01no184_f11.b1 CHROMAT_FILE:
MSMg01no184_f11.b1 PHD_FILE: MSMg01no184_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:40 2005
(309 letters)
>mm_chr9_104531371_104532074
Length = 704
Score = 549 bits (284), Expect = e-161
Identities = 299/306 (97%), Gaps = 5/306 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagtaaggagaagtatcaatgcctggttcataaccacagactacgtaagcgcaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaattcagtaaggagaagtatcaatgcctggttcataaccacagactacgtaagcgcaa 445
Query: 64 gtcagaaaggaagccatgggaacatccactgattggacagagtctcgggttaaaaaagaa 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 gtcagaaaggaagccatgggaacatccactgattggacagagtctcgggttaaaaaag-a 386
Query: 124 aaaaaaaaagatgctaacacttgcacgtgacacagctgtgtcagaggacgacttatactg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 aaaaaaaaagatgctaacacttgcacgtgacacagctgtgtcagaggacgacttagactg 326
Query: 184 caaagtgggaagcaagttgtcagttttagcaaggaaaaaaaaaaccttcaaggatgctct 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 caaagtgggaagcaagttgtcagttttagcaaggaaaaaaaaaaccttcaaggatgttct 266
Query: 244 actgttccttgccctgtaagactgtaacactctatctactcttgaagcctctctcaagct 303
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 actgttccttgccctgtaagactgtaacac----tctactcttgaagcctctctcaagct 210
Query: 304 tcccac 309
||||||
Sbjct: 209 tcccac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 704
Length adjustment: 9
Effective length of query: 300
Effective length of database: 695
Effective search space: 208500
Effective search space used: 208500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_f11.g1 MSMg01no184_f11.g1 CHROMAT_FILE:
MSMg01no184_f11.g1 PHD_FILE: MSMg01no184_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:40 2005
(227 letters)
>mm_chr9_104384108_104384734
Length = 627
Score = 429 bits (222), Expect = e-125
Identities = 225/226 (99%), Gaps = 1/226 (0%)
Strand = Plus / Plus
Query: 1 tcctgcctcaggctgggattcctggcatgtgccatcacatctggcttcacactcttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgcctcaggctgggattcctggcatgtgccatcacatctggcttcacactcttcctg 260
Query: 61 aaaggttctatgtttgtctttctctgttgcgttgaaagaatgatcctgtctgttactgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggttctatgtttgtctttctctgttgcgttgaaagaatgatcctgtctgttactgct 320
Query: 121 gttctgtaaacttttaaagtagagaaactgaagtctacctgtgtgtacagttcagctact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctgtaaacttttaaagtagagaaactgaagtctacctgtgtgtacagttcagctact 380
Query: 181 gaggggcagccaccagggtctgtttttttttttttt-ttttttttt 225
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gaggggcagccaccagggtctgttttttttttttttgttttttttt 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
