BAC Information

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BAC

Clone NameMSMg01-184I15
Chromosome9 (Build37)
Map Location 58,911,755 - 59,073,978
singlet/doubletdoublet
Overlap geneEG665330
Upstream gene4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186
Downstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184I15.T7 (MSMg01no184_i15.b1)MSMg01-184I15.TJ (MSMg01no184_i15.g1)
ACCAG376794AG376795
length1,227698
length of high quality
(start - end)
424 (29 - 452)274 (77 - 350)
definitionCHROMAT_FILE: MSMg01no184_i15.b1 PHD_FILE: MSMg01no184_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:57 2005CHROMAT_FILE: MSMg01no184_i15.g1 PHD_FILE: MSMg01no184_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,911,755 - 58,912,159)(59,073,705 - 59,073,978)
sequence
NNAATCACTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TTGGCAGTGACATTTACGTACCCTAAGCCTGAGGCAAGAAAGAAGAAAAA
ACAAAGAAAAATTGCTATATCCATTATATGTTTAAGAGATTGTGACCATC
TGCCTGCTAAAATGTATGGCCACAGTGGATCTGAAGAGTAGATTTTGACA
TTTTTTTATTTTAATGTTTTTACTTGTATGATGTTTTGGCTGCATCTATG
CCTGTGCATCATGTGTGCCTGGTACCCACAAAAGCCGAAAGAGAGTGTCA
GATCTCCAGGAACTTGGGGTTACAGATGACTGTGAGCCCTTGTGTGGGTG
CTGGGACAGGACCTGAGTCCTCTAGAAGAAGACTTCTAGCCAGTGCTATT
TATCCAGTGCTCTTTGCCACTGCACTGTTTCTGCAGTACCCAAAGAATAT
TTTTTTTCCCCCCCCCCTTATGTGGTCACACCTGATATAAAAAAATAGCT
TCAAACATCTGACAATTCTCCAGCCTCAGCCTCCCAGATACTGAGATGGT
AGGTGAGCCACCTCACCTCTACAAAATAGCTTTTTGTAATTATGACCTTC
ACAATTCATTTGTCTCACAAATGCGTGCCACTGGGCACCATTAGAAACAG
CTTTAAACAGAGCACATATACCATGACAAAGGTCCTTGTGTTTTAAAGCT
AGCAGAAGGAAGTCTCAGCTTCCATGGTGTTTTCCAGTTCACTTAGCAGT
CAATACTTTTGCATAATTGATCACTAAACTCCAAAGAAATCCATGCTGTT
ATTACCCCTACAAGTGAAAGCTGGTATCCATCCCCACATTCCTCTGTCTA
AATTAGGTCTGCAATGCTTTACAATTGTTTTCTACCCTTATACGGCTCCT
TTTCTGTACTAAGGAACCCCAAATCCCTGGAATATTTTTCTTATGCTCCT
GAGGTTTACCTGATTTGTCCCTCAATAACACCATTTGTTGTTTGTTCCAT
GTTTTGTTTCCTCTGTTCATGTTAATAATCGTTCTCCATTTTTTTTATTT
AAAACTCATTTGTCGCTTCATTTCCTTGTTTCATCCTTGTTTTATTTATG
TTTTCCTTCTTATTCTTTCTTTAACATCCTTTATCTCCTTCCTCTTCTTC
TTCTTCTTTTTTCTTTTTCNCATTTAATTTTTCTTTCTCTATCTTCTAAT
CTTTTCGTATCTTAATATCTCTCTTCG
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACAGATACTGATGGTGGAACATT
TAGAGAGGGGAACGCACATTGGTATTTATGCTGCTTTACTCCAGACCCTC
TCTCTTTCACAGGCTTATGAATGGCGTAAGAAAATGGCCCTTGGCCTAAA
GAGAAGCCAAGAGAAGGGTGTGGATGAGGACCACTGACGTCAGGGGCAGG
AGAATCACACGGGGATGTGGGAAGGCAAGCTTCAGTAGGAAGGAGAAGGA
TTCAGTCAGCTTCTGAGGGTGCCTGGGCCAGAGAAAGTAGAAACGGGGTG
AGTTTTTGGATGACCCAGCCCCCCCCAGATCATGACAGATAAAATTAGCT
CCAAGAACAGAACACAAGCCACACCAGCAAAGGGACATTTTGGTAGTTAC
GAAAAGCAAGACTGGTCCATGGGAGGCCTCCTGGATGTCTCCATAGGGCT
TAGCAGGGACTAGAGGCCAGTGCATTGATGTGGAGTCCCTTTCTAGGCCT
CACAGTCTCCCAAACCATTCTAGATCTGCCTCCTGTTGCCCCTTCCACAA
TTCTTCCATGGTGATGTGGGTAATCACTCGATGACTATTTTCTGTCTGGA
CTAAAGGCCCATGAGGGCAAGTTCTATGTATATGCCCCTAGGCTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_i15.b1 MSMg01no184_i15.b1 CHROMAT_FILE:
MSMg01no184_i15.b1 PHD_FILE: MSMg01no184_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:57 2005
         (424 letters)



>mm_chr9_58911539_58912362
          Length = 824

 Score =  752 bits (389), Expect = 0.0
 Identities = 401/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcttggcagtgacatttacgtaccctaagcctgaggcaagaaagaagaaaaaacaa 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcttggcagtgacatttacgtaccctaagcctgaggcaagaaagaagaaaaaacaa 276

                                                                       
Query: 77  agaaaaattgctatatccattatatgtttaagagattgtgaccatctgcctgctaaaatg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agaaaaattgctatatccattatatgtttaagagattgtgaccatctgcctgctaaaatg 336

                                                                       
Query: 137 tatggccacagtggatctgaagagtagattttgacatttttttattttaatgtttttact 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tatggccacagtggatctgaagagtagattttgacatttttttattttaatgtttttact 396

                                                                       
Query: 197 tgtatgatgttttggctgcatctatgcctgtgcatcatgtgtgcctggtacccacaaaag 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgtatgatgttttggctgcatctatgcctgtgcatcatgtgtgcctggtacccacaaaag 456

                                                                       
Query: 257 ccgaaagagagtgtcagatctccaggaacttggggttacagatgactgtgagcccttgtg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccgaaagagagtgtcagatctccaggaacttggggttacagatgactgtgagcccttgtg 516

                                                                       
Query: 317 tgggtgctgggacaggacctgagtcctctagaagaagacttctagccagtgctatttatc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |
Sbjct: 517 tgggtgctgggacaggacctgagtcctctagaagaagacttctagccagtgctaagcagc 576

                                                        
Query: 377 cagtgctctttgccactgcactgtttctgcagtacccaaagaata 421
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cagtgctctttgccactgcactgtttctgcagtacccaaagaata 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_i15.g1 MSMg01no184_i15.g1 CHROMAT_FILE:
MSMg01no184_i15.g1 PHD_FILE: MSMg01no184_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:57 2005
         (274 letters)



>mm_chr9_59073505_59074178
          Length = 674

 Score =  522 bits (270), Expect = e-153
 Identities = 273/274 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagatactgatggtggaacatttagagaggggaacgcacattggtatttatgctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tacagatactgatggtggaacatttagagaggggaacgcacattggtatttatgctgctt 415

                                                                       
Query: 61  tactccagaccctctctctttcacaggcttatgaatggcgtaagaaaatggcccttggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tactccagaccctctctctttcacaggcttatgaatggcgtaagaaaatggcccttggcc 355

                                                                       
Query: 121 taaagagaagccaagagaagggtgtggatgaggaccactgacgtcaggggcaggagaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 taaagagaagccaagagaagggtgtggatgaggaccactgacgtcaggggcaggagaatc 295

                                                                       
Query: 181 acacggggatgtgggaaggcaagcttcagtaggaaggagaaggattcagtcagcttctga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 294 acacggggatgtgggaaggcaagcttcagcaggaaggagaaggattcagtcagcttctga 235

                                             
Query: 241 gggtgcctgggccagagaaagtagaaacggggtg 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gggtgcctgggccagagaaagtagaaacggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)