BAC Information

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BAC

Clone NameMSMg01-185F22
Chromosome9 (Build37)
Map Location 14,366,345 - 14,366,653
singlet/doubletsinglet
Overlap geneAmotl1
Upstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik
Downstream geneEG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185F22.T7 (MSMg01no185_f22.b1)MSMg01-185F22.TJ (MSMg01no185_f22.g1)
ACCAG377382AG377383
length766748
length of high quality
(start - end)
317 (58 - 374)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no185_f22.b1 PHD_FILE: MSMg01no185_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:03 2005CHROMAT_FILE: MSMg01no185_f22.g1 PHD_FILE: MSMg01no185_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCAACTGAGGAATCTCGAGTGGCAGAGAACTAG
CAAAAGAAATGTTCAACAACCTTAGTCATCAGGGAACCGCAAATCAAAAC
GACCCTGAGATTCCACCTCACACTGGTCAGAATGGTTAAGATAAAAAATT
CAGGTGACAGCAGATGCTGGCCAGGATGTGGAGAAAGAGGAACACTCCAC
CATTGCTGGTGAGATTGCAAGCTAGTACAACCACTCTGGAAATCAGTCTG
GCAGTTCCTCAGAAAATTGGACATAGTACTATCTGAGGACCCAGTTATAT
CACTCCTGGACATATACCCAAAAGATGCTTCATTCCCCACCACCCCCACA
TGCTCCACTATGTTCATAGCAGCCTTATCCCCCCCAGCCAAAAAGAGAGA
AACAAGCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGATAC
ATTTACACAATGAAGTACTAGTCAGCTGTTGAAAACAATGAATTCATGAA
ATTCGCAGGCAAATAGAAAATATCGTCCTGAGTGAGGTAACCCAATCACA
GAAGAACACACATGGTATGTGCTCTCTGATAAGTGGATATTAGGCAAAAA
GCTCAGAATAACCACAATATCACTCACGGACCACATGAAGCTCGAGAAGA
AGTAAGACCATCGTGTGGATGCTTTCGCCCTACTTATAAGGAGGAACAAA
TGATTAGTTTAGTCTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAGGAAAAGGAAAAGTTGGAA
ATGGAGTTGGCAGCAGTGCGTACGGCCAGTGAGGACCATCGGAGGCACAT
CGAGATCCTGGACCAGGCTTTGAGCAATGCGCAGGCCAGAGTGATCAAAC
TGGAGGAAGAGGTGAGACCCTCATGGGGGAGGAGTCGAGCCCAGAGGACT
CCTCTGTGGCTCCTGACCAGAGCCACTTCATAGTTGCCAAGGCAAGGTAG
AATTGTGGGAAACAACCCAGATGCAAATGAATAAAAAGTTTATCCATCAT
GGAACCAGACAGAATCTGATATTACTCCCATGGTCCAAGAGCCCACAGCC
TGTCTATTGGTAGGAGGGGCCCCCCGCTGCAAATGATTGACACGACCAGA
AGCCACTGGTGTCTGTACAGAAGAGTTGCTGTGGCCGTCTTTGGGCTCCT
GATTCTAAGGCAAAGGACGGGTGCAGTGATGCTCAGCTGACCCACTCGCT
TCCTGGTTGACTGTGCTGTAGTCCACATGCTCAACCCCGGAAATGTTGAT
TTAGAAGGATATGATGGAGGCCATTTTCAAGATTACCTTTGCTAGCTGTC
TTGTCTATTCCCTTTAACCCCATATAGGATACATTGTTAATCCGTGTTCT
TGGATTTCAAGTCTAGGTCTTTCTGAGTTTTGAATTCTTACGTCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_f22.g1 MSMg01no185_f22.g1 CHROMAT_FILE:
MSMg01no185_f22.g1 PHD_FILE: MSMg01no185_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:03 2005
         (291 letters)



>mm_chr9_14366262_14366952
          Length = 691

 Score =  466 bits (241), Expect = e-136
 Identities = 284/309 (91%), Gaps = 18/309 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaggaaaaggaaaagttggaaatggagttggcagcagtgcgtacggccagtgaggac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 392 ttgaaggaaaaggaaaagttggaaatggagttggcagcagtgcgtacggcaagtgaggac 333

                                                                       
Query: 61  catcggaggcacatcgagatcctggaccaggctttgagcaatgcgcaggccagagtgatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 332 catcggaggcacatcgagatcctggaccaggctttgagcaatgcgcaggctagagtgatc 273

                                                                       
Query: 121 aaactggaggaagaggtgagaccctcatgggggaggagtcgagcccagaggactcctctg 180
           |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||
Sbjct: 272 aaactggaggaagaggtgagaccagcatgggggaggagtcgagcccagaggactcccctg 213

                                                                       
Query: 181 tggctcctgacc--------------agagccacttcatagttgccaaggcaaggtag-- 224
           ||||||||||||              |||||||||| |||||||||||||||||| ||  
Sbjct: 212 tggctcctgacccagctacattaaccagagccactttatagttgccaaggcaagggaggg 153

                                                                       
Query: 225 --aattgtgggaaacaacccagatgcaaatgaataaaaagtttatccatcatggaaccag 282
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 agaattgtgggaaacaacccagatgcaaatgaataaaaagtttatccatcatggaaccag 93

                    
Query: 283 acagaatct 291
           |||||||||
Sbjct: 92  acagaatct 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)