BAC Information

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BAC

Clone NameMSMg01-185I20
Chromosome9 (Build37)
Map Location 26,703,424 - 26,703,724
singlet/doubletsinglet
Overlap geneGm1110
Upstream geneB3gat1, BC038479, Glb1l3
Downstream geneLOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185I20.T7 (MSMg01no185_i20.b1)MSMg01-185I20.TJ (MSMg01no185_i20.g1)
ACCAG377508AG377509
length687757
length of high quality
(start - end)
306 (45 - 350)303 (87 - 389)
definitionCHROMAT_FILE: MSMg01no185_i20.b1 PHD_FILE: MSMg01no185_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:17 2005CHROMAT_FILE: MSMg01no185_i20.g1 PHD_FILE: MSMg01no185_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGACTATCAACAGGCACAGTACAGATACTAGCATGTTCTCAAGCA
CATAGGAATTACCAAAGAAACTTAAAAATTCTTTTGTTTTACTCTGAGAC
AGGGTCCCACTGTACAGTTCCTGCTGGCTTGGGATTTGCCATGTGGACCA
GGCTAAGCTGGCCTCAAACCTGGCCTTTGTTTAATGAGTGCTGGGACTAA
AGGCATGTACTACCACACCAGCCCTGACTGCTTTCTTTAGGACAACTTGG
TCAGTTTCTACATATAAGTGTTTAGTCTGTTTCTCCCAGTTAAGCAATTT
AAATTGCGCCTNNTCTAGGCCCTTAGAATAATTTGTTAGGGCTGCCNNNT
NCTACCCCAACCCCAAAGAATAAATGGGGGGGGGGGGGAGTGATATTTTA
TTATAGAAAGAACACCCAAGTTCTGAAATGACATAGTAAATCAAAATGCT
AACACAGCCAGTTGCCCCTGAGCCACAGAGTGGATGCGCCAAGACACCTC
TCCAGTGGATGTCTAAAGATGTGGCCAGAACAATCCTGTACCAGTTTTCC
TAAACAGACATCACTACAATACAACTTAATTTGTAACCTATATAGGAACT
GGGCAGGTATGCAGTCTGCCTGTAATCCTTTATGACC
AATTTTNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCTCGGAGACT
TTCAAATTACCTCCATCTGAAATCTTCAAGATTTGCTCTAGAGCTCAGCC
CCAGAAAAACATGTTAGATGAGCCAGGACGGACTGAAGTAGTTGGTGGTG
TTTGTTTTCAAAATCCAAAGTCACTCATTACTTCTTTCTCTAGGTTTTAT
ACTTGGATGAATCTTTCTTGTTTCTAGCACACAAACTGTGTATATCAAAC
ATTGCTCATGACTTTTTAGGAGCATACCTATTTCCAGCTTACTATTTCTA
AAGCACTTACCACCAGCTTCTCACAGTGTTTTATCTGACCCGCCGGCAAC
AGTCACCTTTACCTTCAACTCCATTTAACCTGCCATCAACAATTCTCCAA
GGAGAGCAAAAGAATTAAAATCAGGTGAGCTGGAGCTATAACACTACCTA
CTTCCATACCCAGCACACTTTCATTGTCGTCCTCTGTCTCACTGAACAAT
TCATTCTCATTACTTTTCTAGCCTTGGAGAAGTGTATTTATAATGAAAAC
TACAGAAACTTAAGTTCCTATTGCAGTGACACCCCCACACACACACACAC
ACACAGAGGTGTTCATGCTCTGTGACCTCTCCTTCTGAGCAGATGTCTAG
GAGCCATCTACTTATCCAGACTGATACTTATATGAAACAACATCTGGGAG
CCTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_i20.g1 MSMg01no185_i20.g1 CHROMAT_FILE:
MSMg01no185_i20.g1 PHD_FILE: MSMg01no185_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:17 2005
         (303 letters)



>mm_chr9_26703224_26703925
          Length = 702

 Score =  538 bits (278), Expect = e-157
 Identities = 296/302 (98%), Gaps = 1/302 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagctcggagactttcaaattacctccatctgaaatcttcaagatttgctctagagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acagctcggagactttcaaattacctccatctgaaatcttcaagatttgct-tagagctc 259

                                                                       
Query: 61  agccccagaaaaacatgttagatgagccaggacggactgaagtagttggtggtgtttgtt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 agccccagaaaaacatgttagatgagccaggatggactgaagtagttggtggtgtttgtt 319

                                                                       
Query: 121 ttcaaaatccaaagtcactcattacttctttctctaggttttatacttggatgaatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcaaaatccaaagtcactcattacttctttctctaggttttatacttggatgaatcttt 379

                                                                       
Query: 181 cttgtttctagcacacaaactgtgtatatcaaacattgctcatgactttttaggagcata 240
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 cttgcttctagcacacaaactgtgtatatcaaacattgctcatgactttttaggggcata 439

                                                                       
Query: 241 cctatttccagcttactatttctaaagcacttaccaccagcttctcacagtgttttatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 440 cctatttccagcttactatttctaaagcacttaccaccagcttctcacagtgacttatct 499

             
Query: 301 ga 302
           ||
Sbjct: 500 ga 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 702
Length adjustment: 9
Effective length of query: 294
Effective length of database: 693
Effective search space:   203742
Effective search space used:   203742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)