BAC Information

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BAC

Clone NameMSMg01-185O24
Chromosome9 (Build37)
Map Location 11,968,494 - 11,968,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989
Downstream geneLOC622505, LOC100039680, LOC665285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185O24.T7 (MSMg01no185_o24.b1)MSMg01-185O24.TJ (MSMg01no185_o24.g1)
ACCAG377773AG377774
length711748
length of high quality
(start - end)
317 (45 - 361)636 (91 - 726)
definitionCHROMAT_FILE: MSMg01no185_o24.b1 PHD_FILE: MSMg01no185_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:46 2005CHROMAT_FILE: MSMg01no185_o24.g1 PHD_FILE: MSMg01no185_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAATTCTCCAAGTGCAAATAGAATAATTGAAACTCAAGTCATATA
ATGCTATTCTAAATGCATTCCTAAGTGTTCTTTTGAGATTATTCAGTATG
TTTAAGCCTAGAATATACTTGTAATAAACCCAGATATTTCAATAGCAACT
TTGTTTTCACATTAAGAAGAAACAAAACTCCACCTTAAATTCATTCATTC
ACTTGCCAGCATCTCTTGGCCATGAATTAAAAGTTGTACAATTGGTCATT
TTCCCCAAGAGAATTCTTAAAGTAAGGTATGTTTCAACAGTTAAGATATT
CTGCTGAATATCTGAATATCTACTGAACAGAAAGATATTCTACTGGTGAA
GATATCACCATCATGTTTCTTATTTAATATCACATATTAGGTCACTACCC
CTAGTTTACTTTTTCTTAATGGCCCTCAAGTTGTCCAACCTGTTTTCATG
AACTCCTCAGTAAACCACACATGAAGATCTCAGCTACTGAAAAGGAGCAA
CCTGAGCTAAGTAGCCCACACTGGTTGGTCATCAGAAGCTAATGGTGATG
GTTGTTTGAAAATGTAGTAAGACCATGATAAGACATGTGAAATTGCAATT
CTTTCAGCTCAGCCTGCCAGTTCCTAAGTATGTATTAGCACTTGGGAGGA
ATTTTTTAAAN
CCCTAGTTCNNNCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGC
TCTGTACCTCATTTTTTAATAGGTTTATTTTGTTCTTTGGCGTTTAAGGT
CACTTAAAGACAGCATTTTCAACAAATGGTGCTGGTTCAACTGGAAGTCA
GCATGTACAAGAATGCCAATTGATCCATTCTTATCTCCTTGTATGAAGCT
CAAGTCTAAATGGGTCAAAGACCTCCACATAAAATCAGATACACTGAAAC
GAATAGAAAAGCAAATGGGGGAGACCCTTGAGTACATTGGAACAGGGGAA
TATTTCCTCAACAGAACACCAGTACTTTATGCTCTAAGATCAAGAATTGG
AAAATGGGACCTTATAAAATTAGAAAGGTTCTGTAAGGCAATGGACACTG
TCAATAAGAAAAAATGGCAACCAACATATTGGGAAAAGATGTTTACCAAT
CCTACATCTGATAGAGAGCTAATATCCAATATATGCAAAGTACTCAAGAT
GGCCTTGTTTTTAAATAGCTGAATAGTATTCCATTGTGTAAATGAACCAC
CTTGTCTATATCCACTCTTCCTTTGAGGGACATCTAGGTTGTTTCCAGTA
TATGGTTAATATAAGTAAGGTAGCTATGAACAAACTCGAGCACATGTCTT
TTTGAGTAACCCAGTTAAAAGTGGGGAACAGAGTGAAACAGAGAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_o24.b1 MSMg01no185_o24.b1 CHROMAT_FILE:
MSMg01no185_o24.b1 PHD_FILE: MSMg01no185_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:46 2005
         (317 letters)



>mm_chr9_11968291_11969007
          Length = 717

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaattctccaagtgcaaatagaataattgaaactcaagtcatataatgctat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctcaattctccaagtgcaaatagaataattgaaactcaagtcatataatgctat 458

                                                                       
Query: 64  tctaaatgcattcctaagtgttcttttgagattattcagtatgtttaagcctagaatata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctaaatgcattcctaagtgttcttttgagattattcagtatgtttaagcctagaatata 398

                                                                       
Query: 124 cttgtaataaacccagatatttcaatagcaactttgttttcacattaagaagaaacaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cttgtaataaacccagatatttcaatagcaactttgttttcacattaagaagaaacaaaa 338

                                                                       
Query: 184 ctccaccttaaattcattcattcacttgccagcatctcttggccatgaattaaaagttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctccaccttaaattcattcattcacttgccagcatctcttggccatgaattaaaagttgt 278

                                                                       
Query: 244 acaattggtcattttccccaagagaattcttaaagtaaggtatgtttcaacagttaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acaattggtcattttccccaagagaattcttaaagtaaggtatgtttcaacagttaagat 218

                         
Query: 304 attctgctgaatat 317
           ||||||||||||||
Sbjct: 217 attctgctgaatat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)