BAC Information

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BAC

Clone NameMSMg01-186G23
Chromosome9 (Build37)
Map Location 28,327,144 - 28,327,431
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186G23.T7 (MSMg01no186_g23.b1)MSMg01-186G23.TJ (MSMg01no186_g23.g1)
ACCAG378120AG378121
length859746
length of high quality
(start - end)
141 (46 - 186)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no186_g23.b1 PHD_FILE: MSMg01no186_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:25 2005CHROMAT_FILE: MSMg01no186_g23.g1 PHD_FILE: MSMg01no186_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACTTTCTTGAGTTCCTTATATATATTGGATATTAGTCCCC
TATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGATGGTGGTCTT
TCTCGCCTACTTCCCTCTTCCAGTGCCGGGTTTTTGTTCTTTACTTTATG
GGCCTCTGTCACTGTCATATTCCTACTTGATACCACTTTCATTATTTCTG
CAAATTTATTTACCTCACTTTAGTTTTTTTTTTTTTCCTACATACTATTG
CCTATTATATTCCGTCTTTTATTTTCCTCTCCTAACTCGCTTTTCTATTC
GTATTATTTCCATCCTCTTGTTTTCCCCCACTTCTGTTAAAAAACAATAA
ATCTCACTCTTCTTCTACTTCTTTCTCCTCTTTTTTCTCTTTTCCTACAC
ATGTGCTTAATTGCTTTTCGCAGTTTACTTTTCCTCTACCCTTTACCTTC
TTACATTATCTCCTCTTTTTTTCTCTCCTACTCCTTTTCTTCTTACTTCT
CTCTCTCTCACCATTTTGTTTAATTTTCATGTCCTCTTATTTCTTTTCTC
ACGCTCCTTACCTTTTTCCTTTCCTCTCTTTCTTCTCGCCCTTGTTTTCT
CCCCCGCTCCCTCTCTCCTTTTCTTTCTCTCCCTTTTAACTCTCTCCTTC
CCCTGTTACATCTTATTTCTCTATTTACCTTTTTTCTTCCCACACTTTCT
TCACTCTTCTGTCTCTCATTTTTCTCTACTTCGACATCTATACCATTCGC
TCACTATAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATAGAGTTCCTATACACTTTGC
AATGTCAATCCTTCCTCCTTTCATAAGAGTCCCAAAACTCCATCCACTGT
TTGGTTGTGGGTGTCTGCATCTGTCTGAGTCAGCTGCTGGGTAGAGCCTC
TGTCCCAGACATTTATGCATAAAAGGAACAGAAAACCTTTTAAGGAAAAT
ACTATTTGTAAACTTATGATTCTTTCATATGTAACATGAGGCATGTACCA
TACTAGGTAAAAGAAAATATAATTAGTTGTGAATAGAAATGTGCATTTGT
GTGTGTGTGTGTGTTTTTTTTTCCCCCCCCCCCCCCCNGGANGGGATATT
TGGNTGGGTTCTCTTCCCCCCCCTTATAAAAAAAAAAAATTCGTCTGAGG
GGTGTTTTCCCCTTTCATTCTTCTCCTTTTACTCTTTTTCTCACCTTTTT
CCTTCTCCATTTTCCCCCCCTAAACTCCTTCTCTTTCTTTTTTACTTATC
TACTTCCTTTTTTTGTACCATTCTTTTTTCTTTTTCACACTCTACTTCTT
TTTTTCCTCCTCTTCCTTTTACTTTCTTTTTTTATACCTATTTTATTTTT
CCCACTTTATCTTATTTTTACCTTCTTTTATTATCTCTATTTCCCTATTT
ATTCCCTTTCCCATCTTCTTTTTTTTTTTCCTCTTCTTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_g23.g1 MSMg01no186_g23.g1 CHROMAT_FILE:
MSMg01no186_g23.g1 PHD_FILE: MSMg01no186_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:25 2005
         (292 letters)



>mm_chr9_28326802_28327493
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatagagttcctatacactttgcaatgtcaatccttcctcctttcataagagtcccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 630 ctatagagttcctatacactttgcaatgtcaatccttcctcctttcataagagtccccaa 571

                                                                       
Query: 61  actccatccactgtttggttgtgggtgtctgcatctgtctgagtcagctgctgggtagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 actccatccactgtttggttgtgggtgtctgcatctgtctgagtcagctgctgggtagag 511

                                                                       
Query: 121 cctctgtcccagacatttatgcataaaaggaacagaaaaccttttaaggaaaatactatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cctctgtcccagacatttatgcataaaaggaacagaaaaccttttaaggaaaatactatt 451

                                                                       
Query: 181 tgtaaacttatgattctttcatatgtaacatgaggcatgtaccatactaggtaaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtaaacttatgattctttcatatgtaacatgaggcatgtaccatactaggtaaaagaaa 391

                                                           
Query: 241 atataattagttgtgaatagaaatgtgcatttgtgtgtgtgtgtgtgt 288
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 atataattagttgtgaatagaaatgtgcatttatgtgtgtgtgtgtgt 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)