BAC Information

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BAC

Clone NameMSMg01-187O22
Chromosome9 (Build37)
Map Location 11,930,567 - 11,930,903
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039989, LOC622505, LOC100039680, LOC665285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187O22.T7 (MSMg01no187_o22.b1)MSMg01-187O22.TJ (MSMg01no187_o22.g1)
ACCAG379115AG379116
length764742
length of high quality
(start - end)
317 (45 - 361)337 (386 - 722)
definitionCHROMAT_FILE: MSMg01no187_o22.b1 PHD_FILE: MSMg01no187_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:23 2005CHROMAT_FILE: MSMg01no187_o22.g1 PHD_FILE: MSMg01no187_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAAGAATATTACCTATTCAGTAACACTCAAATTTACTTCTAGTA
GAGACAGTAAAAATAATCAGGCATTACAATTTACTTGAATAGAGCTAGAA
AGCTCAGTGCTAGTCTACATAGTAATTACTTAGGACAATAGTCGAGTCAC
ACCCAAACACAGGAATACACAATGGCCTAGGAAATAGGTGAGTTGTAGTA
TTATTCATGAAAGGGTTAGTAAAACGGAATTTCCCTAGTAAAGGTATTTC
ACTAGGCACAAAGGAATAGCATAATCAGGTATTTACTAAAGAACCCTTGG
TGGTGGATTTATTANATTACACTATTGCCANTCGACCATTCACCTGGCTC
CTGTGTTTAGCTGATCCCCCTCGAAAAAGAAAAAAGTCTCAGTTGGGGGC
GAGGTCTGGTTCCTGCCATCTTTTTATGTATACATTTTCTTTGTTTTGTG
TTAGGAACCAGTGTACCTTGATGGATGTATTCTCCTAGCCTTCTTGTTTT
TCATCTGTATTAAAAGCCTGGCGTCTGCTTGGAAAAAATACATCTAGATA
CAGCACTCCCTTGTGTCCTGTCTGTTTGTCACCCTTTTCTTGCTCACTCC
ATGCCCACCTGCCAGAACCCCTAGTTTTCCACGTATTGAGGCGGGCTTGA
CTGAGCCCGTGCTGTGGCCCAATTTTGTTAAAAAGAGAGACCAATTACTT
CTTGTAAAAGCGTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGAAAATATAAGTATGAATTA
TGTCAAATTTTATGAAGAAAATTTTTCCCTAACTCATTTGGTAGTTTTGA
AAATATTTTCTGGATAAAAAGTTTTACAATTGATAAGCCTGTTGCTTTGA
TGCTTAAATGATTTATTCTAGATTTGACAAAAGTTATTTTCCTAAGTAAC
TTCAGAAAAAAAGATATCTAAATAATGTACTTATTTGGTACCTTTTTGTC
TTTCTTCTTATTAGCCTACATTCAATAGCCAATGACATAACTCTTAAATG
CATTTTAAATATGTGCCTTATTTGTACCCCACCACTTCTCATTAATGTTT
AATATGTATTTCAATTCGAATGCAAATCTCATATAATGCTTTATTAAAAT
AAATAAAAATTGACAAATACAATGTGTTTGGGAAGCCCATAGCCCACAAT
TTTGCTATTATTTTACTGGGATGATAAACTCTTGTGTATGCTTGTTTCAC
TGAGATAGGATTTCTCCCTATCCCAGGGTAGGGATTCCAAAGCCTTTCAG
CTGCAGCATATTTGTATATGAGTAGAGTCAACAATTTCCCAATCATATGA
ACATGTATGTGTATTACATGACTTCATTACCGTAACACCTGCCAGAAACT
AAGTCACATGTGGACAATCAGGGCCTCCCTCAGGCATCGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_o22.g1 MSMg01no187_o22.g1 CHROMAT_FILE:
MSMg01no187_o22.g1 PHD_FILE: MSMg01no187_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:24 2005
         (337 letters)



>mm_chr9_11930367_11931103
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcattaatgtttaatatgtatttcaattcgaatgcaaatctcatataatgctttatt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttctcattaatgtttaatatgtatttcaattcgaatggaaatctcatataatgctttatt 260

                                                                       
Query: 61  aaaataaataaaaattgacaaatacaatgtgtttgggaagcccatagcccacaattttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaataaataaaaattgacaaatacaatgtgtttgggaagcccatagcccacaattttgc 320

                                                                       
Query: 121 tattattttactgggatgataaactcttgtgtatgcttgtttcactgagataggatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattattttactgggatgataaactcttgtgtatgcttgtttcactgagataggatttct 380

                                                                       
Query: 181 ccctatcccagggtagggattccaaagcctttcagctgcagcatatttgtatatgagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctatcccagggtagggattccaaagcctttcagctgcagcatatttgtatatgagtag 440

                                                                       
Query: 241 agtcaacaatttcccaatcatatgaacatgtatgtgtattacatgacttcattaccgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcaacaatttcccaatcatatgaacatgtatgtgtattacatgacttcattaccgtaa 500

                                                
Query: 301 cacctgccagaaactaagtcacatgtggacaatcagg 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacctgccagaaactaagtcacatgtggacaatcagg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)