Query= MSMg01no189_a17.b1 MSMg01no189_a17.b1 CHROMAT_FILE:
MSMg01no189_a17.b1 PHD_FILE: MSMg01no189_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:54 2005
(311 letters)
>mm_chr9_14074435_14075146
Length = 712
Score = 565 bits (292), Expect = e-165
Identities = 304/308 (98%), Gaps = 1/308 (0%)
Strand = Plus / Plus
Query: 5 gaattctctaatctggacaaggtgggcaatcttcatggagatcacagtcatttctgcata 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattctctaatctggacaaggtgggcaatcttcatggagatcactgtcatttctgcata 264
Query: 65 tggtggcgatgtctataataattcattattattattaactgtatatttgcagcattatgc 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 tggtggcgatgtctataataattcattattattattaactatatatttgcagcattatgc 324
Query: 125 tttccttaaagatagtcccttatagtacatgctttaagtccttacaaaactggaataatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttccttaaagatagtcccttatagtacatgctttaagtccttacaaaactggaataatc 384
Query: 185 actgacagctcacccctgtcagattggaaagctgaggcttaaaatcatatagctcatggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgacagctcacccctgtcagattggaaagctgaggcttaaaatcatatagctcatggt 444
Query: 245 ggtactgtactaagccctgtatttcctcaattttt-gtacattgctatcttctctacctc 303
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 445 ggtactgtactaagccctgtatttcctcatttttttgtacattgctatcttctctacctc 504
Query: 304 cacattat 311
||||||||
Sbjct: 505 cacattat 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 712
Length adjustment: 9
Effective length of query: 302
Effective length of database: 703
Effective search space: 212306
Effective search space used: 212306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_a17.g1 MSMg01no189_a17.g1 CHROMAT_FILE:
MSMg01no189_a17.g1 PHD_FILE: MSMg01no189_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:54 2005
(291 letters)
>mm_chr9_14165659_14166351
Length = 693
Score = 499 bits (258), Expect = e-146
Identities = 284/294 (96%), Gaps = 4/294 (1%)
Strand = Plus / Minus
Query: 1 actatgtagaccagactagtcttgaagtcagagatctgtggcaatctgcctcacatgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 actatgtagaccagactagtcttgaagtcagagatctgtggcaatctgcctcacatgcta 457
Query: 61 ggactaaaagtgtgcaccctgacagccagctcagatacatttggggatgatgaatgccca 120
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 456 ggactaaaagtgtgtaccctgacagccagttcagatacatttggggatgatgaatgtcca 397
Query: 121 gcaaaacggataaggtcaaaggtcagtggaagagatgctgtttagacccgagcactggtc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcaaaacggataaggtcaaaggtcagtggaagagatgctgtttagacccgagcactggt- 338
Query: 181 agaagccagagcatttgg---agttctccgaccaccaccgcatatgtataatttaaaaaa 237
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 337 agaagccagagcatttggagaagttctccgactgccaccgcatatgtataatttaaaaaa 278
Query: 238 ttaaattcatatttgagcaaaaaggaaatgaaattcttaggtatagaaactatg 291
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 277 ttaaattcatatttgagcaaaaaggaaataaaattcttaggtatagaaactatg 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space: 192888
Effective search space used: 192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
