Query= MSMg01no189_i20.b1 MSMg01no189_i20.b1 CHROMAT_FILE:
MSMg01no189_i20.b1 PHD_FILE: MSMg01no189_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:33 2005
(320 letters)
>mm_chr9_28520782_28521500
Length = 719
Score = 582 bits (301), Expect = e-171
Identities = 310/313 (99%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 5 gaattcacttttaagattattttgatttaaaatcattttaatgtttcttataatatatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcacttttaagattattttgatttaaaatcattttaatgtttcttataatatatgt 564
Query: 65 atatctatatctatctctatatgttaaaacttttatgtatatatacacctgcgctatata 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atatctatatctatctatatatgttaaaacttttatgtatatatacacctgcgctatata 504
Query: 125 tgaggttattttgttcttttaacatttaggcatttaatgtacttcttaattcatctcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgaggttattttgttcttttaacatttaggcatttaatgtacttcttaattcatctcaat 444
Query: 185 atttttcttgagataaaatttgcataccacagatgttaagtaatttaatgaggttccaaa 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atttttcctgagataaaatttgcataccacagatgttaagtaatttaatgaggttccaaa 384
Query: 245 agtttatgtactcaataaattcaaagcaagtaaagaatatttccttggaaattttttttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 383 agtttatgtactcaataaattcaaagcaagtaaagaatatttccttggaaa-tttttttg 325
Query: 305 taatattcctcta 317
|||||||||||||
Sbjct: 324 taatattcctcta 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_i20.g1 MSMg01no189_i20.g1 CHROMAT_FILE:
MSMg01no189_i20.g1 PHD_FILE: MSMg01no189_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:33 2005
(289 letters)
>mm_chr9_28495258_28495946
Length = 689
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Plus
Query: 1 cttgggtgtggtgtatgcatggctgttgacaaaactacagaaatactgcactcaggatgc 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 cttgggtgtggtatatgcatggctgttgacaaaactacagaaatactgcactcaggatac 260
Query: 61 cacctaaattgaggtcaagaaaagaaaagaatagtatctattgaagactacaatagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctaaattgaggtcaagaaaagaaaagaatagtatctattgaagactacaatagaaga 320
Query: 121 gttactcattaattttagagttattattggctcttttaaatattagaatttttatgacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttactcattaattttagagttattattggctcttttaaatattagaatttttatgacaa 380
Query: 181 tgcacagatgctaagtgaatttataatttagtataagaggtgttccttgtccccagaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacagatgctaagtgaatttataatttagtataagaggtgttccttgtccccagaatg 440
Query: 241 tcaaaggataaatccaaataaactaaccattttgtccaaagctctgtga 289
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tcaaaggataaatccaaataaactaacccttttgtccaaagctctgtga 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
