BAC Information

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BAC

Clone NameMSMg01-189K07
Chromosome9 (Build37)
Map Location 31,610,701 - 31,745,946
singlet/doubletdoublet
Overlap geneBarx2, LOC100042266
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
Downstream geneTpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189K07.T7 (MSMg01no189_k07.b1)MSMg01-189K07.TJ (MSMg01no189_k07.g1)
ACCAG380257AG380258
length736738
length of high quality
(start - end)		313 (58 - 370)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no189_k07.b1 PHD_FILE: MSMg01no189_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:40 2005CHROMAT_FILE: MSMg01no189_k07.g1 PHD_FILE: MSMg01no189_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,610,701 - 31,611,010)(31,745,708 - 31,745,946)
sequence
ACCCCNCCNGGCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGATAATCATGAGACTCTCAACTGAGACTCCAG
CCATTGTTTCCTATACTTCTTTCTTGGTTACATGCAATTCTATACAAGCT
ACATATGATCTAGTCATTTCCAGAAGTGAAAAGTTAACTGAAGAGGGCAC
TCCACTATGCAACTATGGAGAACTTCTCATTCATGCTGGATGAGACTCTT
CTGTGGTTTGGTTGCTTTGGAGTCAGCTTCCTGTAAGGAGCCCTTCTCAA
CATGCTCTATAAATAAGTCAATAAACTGATTGGTTAACAAGCTTGGACTT
GGTGAAATTGTACTGCCGTGCCATATTTTGTTTCCACTACAACCCCGTTC
CTGTCTCCCCAGAAAAAGTTCACTCAACACGTACCAACAAAATACACAAT
ACTGGCACAAGAATAGAGGCATAGAGCAACATACAGAAGAACAGACCTAG
TTATGAACTCACACAGGTGTAACCACATGATCTGACAGAGGATCCTAAAA
CTATCCTTTGGAGAAAAGTCAACCTTTGGACAGCAAAACCTGGATATCTA
CCTGTGGAAGGAATAGGATGAGTTATTACTTACCTTTCACTGCGTATAAA
ATGTCTTTCCGATGGATCAATGGTCACGAATGAAAAATCAGGACAAATAC
AGAGCTGGATGCTCTCAGCCAACCACTGGACTGAGC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATATAGCAGGAGCAGACCCTGGAGAT
GGGATACTGTGGAAGTACTAGTCTAAGAAGTTTTTTTATAGGATGTCGGG
CAGAAATTGGGATGAGAGAGGCATGGAAATGAAGATGAGCTGTTAAGTCC
ATTTGGACCAGCCACAGGCTGTCCAGGGCAAGTCCTTGTGCATAGCCTCT
TGTCAAGAGGCTATGTCCTTGACACATAGAAAGAAGCAGACACCAGACCT
CCTCTGCCATCCGGGGTCTCCAGAAGAAACATTCTCCCACCTGCTCTCTG
TAGCCCCTGTCTTGTTTTATCACCCTCTCCCCCTCTTTCTCATAAATATG
TTCCCTCTCTCCCCGGCCCCCCCCTGGGGAAAAAAAAGTTTTNNCNTTTT
ATTTTCTATGAATCAGACCCCCCAAAAGGGGCCTCCAACCCCCTCCTATG
GGGTGGGCCCCGGCCTNGGTCTGTTGAAAACTAACTTCCTCCCCTTGGAG
TAAAACCTCTGGGCTTTTACCCTTGGACCTCTCCCCTCTCCTTAAATTGG
GTTTTTCGGTTTTTCTCTTTTGCTCCGAAAAAAAACCCTTTCTTTATTTT
TCTCCCCTTGTTATCCCATTTTTTTTCTCTTTTTTTTTCTTCCTTTTTAC
TTACACCCCCTTTCATTTTCTATCCTACTCCTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_k07.b1 MSMg01no189_k07.b1 CHROMAT_FILE:
MSMg01no189_k07.b1 PHD_FILE: MSMg01no189_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:40 2005
         (313 letters)



>mm_chr9_31610498_31611210
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagataatcatgagactctcaactgagactccagccattgtttcctatacttct 63
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcagataatcatgagactctcaactgagactccagccattgttccctatacttct 263

                                                                       
Query: 64  ttcttggttacatgcaattctatacaagctacatatgatctagtcatttccagaagtgaa 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcttggttgcatgcaattctatacaagctacatatgatctagtcatttccagaagtgaa 323

                                                                       
Query: 124 aagttaactgaagagggcactccactatgcaactatggagaacttctcattcatgctgga 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 aagttaactgaagagggcactccactctgcaactatggagaacttctcattcatgctgga 383

                                                                       
Query: 184 tgagactcttctgtggtttggttgctttggagtcagcttcctgtaaggagcccttctcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagactcttctgtggtttggttgctttggagtcagcttcctgtaaggagcccttctcaa 443

                                                                       
Query: 244 catgctctataaataagtcaataaactgattggttaacaagcttggacttggtgaaattg 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgctttataaataagtcaataaactgattggttaacaagcttggacttggtgaaattg 503

                     
Query: 304 tactgccgtg 313
           ||||||||||
Sbjct: 504 tactgccgtg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no189_k07.g1 MSMg01no189_k07.g1 CHROMAT_FILE:
MSMg01no189_k07.g1 PHD_FILE: MSMg01no189_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:40 2005
         (239 letters)



>mm_chr9_31745508_31746146
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatatagcaggagcagaccctggagatgggatactgtggaagtactagtctaagaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctatatagcaggagcagaccctggagatgggatactgtggaagtactagtctaagaagtt 380

                                                                       
Query: 61  tttttataggatgtcgggcagaaattgggatgagagaggcatggaaatgaagatgagctg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 379 tttttataggatgtcgggcagaaattgggacgagagaggcatggaaatgaagatgagctg 320

                                                                       
Query: 121 ttaagtccatttggaccagccacaggctgtccagggcaagtccttgtgcatagcctcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttaagtccatttggaccagccacaggctgtccagggcaagtccttgtgcatagcctcttg 260

                                                                      
Query: 181 tcaagaggctatgtccttgacacatagaaagaagcagacaccagacctcctctgccatc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcaagaggctatgtccttgacacatagaaagaagcagacaccagacctcctctgccatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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