CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGGGGTACCAGATGGTTGTGTGGGTTACCCAGTGACTAAGCTTG
GCTCCAATCTGCACCGTCGTCCCGTAACCCATGCGCCTCGCAGATCTGCT
GACTCCATCAGAAAACAAACAAGCTCTTGCTCCTGTTCGTGGCCGGCAGA
AACTGACCTGGCATAGAAATCAGAGCCAACATCTCAGCAATCTAACAAAT
GAAGCCCCATGACTGCTGTTTATTTGCTGGGGATGTGTTTCCCTCGACCC
CAGGAAGGAGAGAGCACCACGGTATTGCTGAATGATTGCTTGGGAAGGAA
AGCAAAGTTTGTATAAAAAGCTCACCTCCATCCTTGCCTTTGAAGGAGTC
TCATCTGTGACTAACTGGTGCTTAACACCTTCCAAGTCCATCTTCATCAC
ATTCCTTCTTGACCTTCACTCAAAGGCTTCCTGAAGTTTTCTTGCAAGAA
ATCTTAGAGATGGGTCAATTAGGAGTTATTATAACTCTTTATTCCCTCTG
CCTGGAATGCTTTCACTGGTTAATCTTTTCACTGCACACTGAGGATGCTT
TACAGGTACATAAATGCATGCTTGTATTGACAGATACTGTCTGACACCTG
ACACTGTATGTAGAGTTACCATGAGCGTGCACATCACCTGCAAGCTCTGA
CTGTACTCACCCGTGTGTGACGGTTTATA

TCTTTTTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGAGTGCA
AATATGCTTTGGATCATCTCTGCCAAGTTGAGGCCTAGCATGTGATGGCC
ATTCATGTGCCTAGATCAATATAAATATGGATATCCTCATATGAATTAGG
CAGGGAGAGTGAGACAATTTGACAGCCCCCTGCTGAGACACAGCAGCTTC
CATCCTACAGAACAGCCCAAAGAGCTGAGTGCAGCCTCGGTGGGCCACGA
GAGAGAGAACAGCAGCCTGGAAAGGGCAGATGCTTTAGAGATGTTCACTT
GACAGAGTGAAGCCTGTCTCTCATATGTTTTGTCTTCCCCCGCCCCCCTA
AGTAGGAGCTTGTTTTAGGGTGTTACATAACGTGCTGGCTCACAACCACT
CTGGTGGAATGAACGGGGGCATCATGGTGAAAGTGGGCTGTGATGTGCGG
GACACGGGCCTGTGGTTCTCTTACATGATGGATTCTGGGCCTTCTGCATT
GTCATGCTTGAACACACAGCTGGGAGTGGAGATGTCTGTCAATCAAATGG
GAAAAATTAGCTGTGCCAAAGTTGGGAACAGAGCAGAAAAGAAAGAAGGA
GATTGTCAGTGGAAGCTAGATCCTTAGCACAGTGCTCTGGGAACCATGAG
CAGGGCACTCCATTTCTGCGCCATCAGTTTGATTGACAGCACTTCT

Query= MSMg01no189_n24.b1 MSMg01no189_n24.b1 CHROMAT_FILE:
MSMg01no189_n24.b1 PHD_FILE: MSMg01no189_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:57 2005
         (343 letters)



>mm_chr9_29761943_29762685
          Length = 743

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccttgcctttgaaggagtctcatctgtgactaactggtgcttaacaccttccaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccttgcctttgaaggagtctcatctgtgactaactggtgcttaacaccttccaagtc 260

                                                                       
Query: 61  catcttcatcacattccttcttgaccttcactcaaaggcttcctgaagttttcttgcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttcatcacattccttcttgaccttcactcaaaggcttcctgaagttttcttgcaag 320

                                                                       
Query: 121 aaatcttagagatgggtcaattaggagttattataactctttattccctctgcctggaat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aaatcttagagatgggtcaattaggagttattataacgctttattccctctgcctggaat 380

                                                                       
Query: 181 gctttcactggttaatcttttcactgcacactgaggatgctttacaggtacataaatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttcactggttaatcttttcactgcacactgaggatgctttacaggtacataaatgca 440

                                                                       
Query: 241 tgcttgtattgacagatactgtctgacacctgacactgtatgtagagttaccatgagcgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tgcttgtattgacagatactgtctgacacctgacactgtatgtagagttagcatgagcgt 500

                                                      
Query: 301 gcacatcacctgcaagctctgactgtactcacccgtgtgtgac 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacatcacctgcaagctctgactgtactcacccgtgtgtgac 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no189_n24.g1 MSMg01no189_n24.g1 CHROMAT_FILE:
MSMg01no189_n24.g1 PHD_FILE: MSMg01no189_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:57 2005
         (290 letters)



>mm_chr9_29873601_29874290
          Length = 690

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgagtgcaaatatgctttggatcatctctgccaagttgaggcctagcatgtgatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cagtgagtgcaaatatgctttggatcatctctgccaagttgaggcctagcatgtgatggc 429

                                                                       
Query: 61  cattcatgtgcctagatcaatataaatatggatatcctcatatgaattaggcagggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cattcatgtgcctagatcaatataaatatggatatcctcatatgaattaggcagggagag 369

                                                                       
Query: 121 tgagacaatttgacagccccctgctgagacacagcagcttccatcctacagaacagccca 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 368 tgagacaatttgacaaccccctgctgagacacagcagcttccatcctacagaacagcccg 309

                                                                       
Query: 181 aagagctgagtgcagcctcggtgggccacgagagagagaacagcagcctggaaagggcag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 aagagctgagtgcagcctcggtgggccacgagagagagaacagcagcctggaaaggacag 249

                                                           
Query: 241 atgctttagagatgttcacttgacagagtgaagcctgtctctcatatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgctttagagatgttcacttgacagagtgaagcctgtctctcatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)