BAC Information

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BAC

Clone NameMSMg01-190E20
Chromosome9 (Build37)
Map Location 33,805,185 - 33,805,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190E20.T7 (MSMg01no190_e20.b1)MSMg01-190E20.TJ (MSMg01no190_e20.g1)
ACCAG380695AG380696
length697700
length of high quality
(start - end)		318 (380 - 697)279 (78 - 356)
definitionCHROMAT_FILE: MSMg01no190_e20.b1 PHD_FILE: MSMg01no190_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:30 2005CHROMAT_FILE: MSMg01no190_e20.g1 PHD_FILE: MSMg01no190_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAAAGAAGAAAGAAAGAGAAAAATCCCAAGGTATACTATNGACC
TATGCTAGCAGTGTGTTTTGCAAAACACTGCTAAGCTTAGTTCAGACTAG
TGTGGGCTCCCAGCCAAGCAAGCAGGACCATAGATGTGGAGAGTGGTATC
ACCCACAGCTGTGAGGAATACACAAAAATGTCTGTGAAATGAGACAGTGT
GAGTAGATCAATTCATCGACCACTCCTGGGTAAAAAAAAATAACAAAACA
AAACCAAAACACTCACACCTACTCATATTGTATATCGTATTGGTATTAGA
CACACATTTTTATTTAGCCCCCCCCCCTTAATCTTACTGTACTGCTCAGG
CAAAATTAGCCTATCAAATTCACATGTGGAGTGAATACACACTTAATGAG
ACAGGACACTGAGTCTTGCAGCATAGGAATAACTCCTTGGGGTCTGCCTA
ATTCTGAAGTAAGGACACGAATGGTGCTGAGTGGATAGCTCACGGAACAA
GAATAAGGATCTACCTACTCTTTAGCAGCTGGAGGAGCAGTTAGAAGACC
CCAGAATGTCCACCCAATTCTGCCTCTGCTGCCACTGTGACCCAGTGCAA
GCTCACATGTTGGTTGTTCCTCAGCTTCTGCTCTTTACAGAGACTGA

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATA
AAAGCAATCTACAGTAAACAAGTAGCCAACATCAAAGTAAATGGTGAGAA
GCTGGAAGCAATCCCACTAAAATCAGGAACTAAACAAGGCTGCCCACTTT
CTTCCTACCTATTTAACATAGTACTTGAAGTCCTAGCCAGAGCAATTAGA
CAACAAAAGGAGGTCAAGTGGATACAAATTGGAAAAGATGAAGTGAAAAT
ATCACTTTTTGTAGATGATATGTTAGCATATATAAGTGACCCTAAAAATT
CCACCAGATTTTTCCTAACCCCGACACACACCTTCAGTGAAGTAGCTGGA
TATAAAATTAACTCAAACAAGACAATGAAACTTTCTCTACACAAAGAATA
AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTAAATAGTCACA
AATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCT
GTATGATAAGAACTTCAAGTCTCTGAAGAAACAAATCAAAGAAGATCTCA
GAAGATGGAAAGATCTCCCATGCTCATCAATTGGCAGGATCAATATAGTA
AAAATGGCTATCTTGCCAAAAGCATTCTACAGATTCAATGCAATCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_e20.b1 MSMg01no190_e20.b1 CHROMAT_FILE:
MSMg01no190_e20.b1 PHD_FILE: MSMg01no190_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:30 2005
         (318 letters)



>mm_chr9_33804985_33805698
          Length = 714

 Score =  588 bits (304), Expect = e-172
 Identities = 313/318 (98%), Gaps = 4/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcttactgtactgctcaggcaaaattagcctatcaaattcacatgtggagtgaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcttactgtactgctcaggcaaaattagcctatcaaattcacatgtggagtgaataca 260

                                                                       
Query: 61  cacttaatgagacaggacactgagtcttgcagcataggaataactccttggggtctgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttaatgagacaggacactgagtcttgcagcataggaataactccttggggtctgcct 320

                                                                       
Query: 121 aattctgaagtaaggacacgaatggtgctgagtggatagctcacggaacaagaataagga 180
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattctgaag----gacacgaatggtgctgagtggatagctcacggaacaagaataagga 376

                                                                       
Query: 181 tctacctactctttagcagctggaggagcagttagaagaccccagaatgtccacccaatt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctacctactctttagcagcttgaggagcagttagaagaccccagaatgtccacccaatt 436

                                                                       
Query: 241 ctgcctctgctgccactgtgacccagtgcaagctcacatgttggttgttcctcagcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgcctctgctgccactgtgacccagtgcaagctcacatgttggttgttcctcagcttct 496

                             
Query: 301 gctctttacagagactga 318
           ||||||||||||||||||
Sbjct: 497 gctctttacagagactga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 714
Length adjustment: 9
Effective length of query: 309
Effective length of database: 705
Effective search space:   217845
Effective search space used:   217845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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