BAC Information

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BAC

Clone NameMSMg01-190P15
Chromosome9 (Build37)
Map Location 39,265,796 - 39,266,083
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1
Downstream geneOlfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190P15.T7 (MSMg01no190_p15.b1)MSMg01-190P15.TJ (MSMg01no190_p15.g1)
ACCAG381146AG381147
length696727
length of high quality
(start - end)
310 (45 - 354)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no190_p15.b1 PHD_FILE: MSMg01no190_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:24 2005CHROMAT_FILE: MSMg01no190_p15.g1 PHD_FILE: MSMg01no190_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTTTATATTCAACATGGGTATGTGAAGGGGGGTGGACTGTGAGA
GGAAGTTTGGTAAAGTTGATCTGAATTTGAAGCCCCAGAGATTCAGAAGG
AATGGTAGAAGCTTTGCCTACTCCCAGTACCAGGCCCCTGATACTTAGCC
ACAGTCCCCCATAGAGAAAGTTATAGCCATCAGTCATGCAGGGGAGGTGC
CCCCAAACCCCTCCACATGTAAATCACTAACATCTCAGATCAAGCCAATA
GGAAACACCTGCTGTTAGACCCAAACCCATCCCAAAACTGTATGTAAGAT
CCTATTTTTTTTGACCCCCCCCCCGCGAGAATTATTTCATTCCCTGAGAG
CATGTATCTTATAAGAGCTGAAACACTGCCTCAGAAGAGAAACCTCTCCT
GAAGCTTTCACCAGTACAAGCTCCGTGCACCTCACTTGCTAGCCAGCCCT
TCCCTGGCTGTATATACCTACATACATATATGCATACATGCATGCATACA
TACAAATATACATATATGTATGTCCACATTTATTTTTGAAAAGAATATAA
ATTTTTAGAGAATTTGGAGAACTATAAGAGGAGTTGGTGAAGAGAGGGAA
GGTTGGAAATGATGTCATTTACGTATGCTTTTATGAACTTCTCCAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGCCTAAATCTGCCTTACTATAAT
AAATTAAGTAAAAATTGGATTCTAAATATGTGAAGAAATTTACAAGATAA
ATAAAACTAGAAAGAAAAGACAATAAAAGTTGTACTTGAATTGATTATTA
CTTCATATTCATGGGCTTACATAAAATAGAGGGGTGTACTAATATTTTCA
GTAATGTTGCATAATAAAATTTGAGTAAATTCAAAACCCCAAATTTTTTA
TACTAATCAATGTTTTCATTATTCTTTTATTTGCTGCTAATATATTTAGA
ATGCTATAATTTTTAAATAGGCTCNANAACTNAATCTATTTAAATGCCTA
TAGATTTAATATTTTTCAATGAATGTAAAATTCATTTTAAAACCCAGTTT
ATTTTATCAGAATAAAATAAAAGTACAAAACTTGTAACATTTAATTATAT
TAAGTTCAAATTAAGTACCTAACCAAAATCTAGTTTAATAATCTAGAAAT
TCTGTAATGTAGAAGCAGATGCCTAGTCTTGTAATTGAGATTAATTATGT
AAATTATATTCATCATAGTATGAATCACTGATTAAGAGTGTTTTACACAG
TCTAGTCCCATGACAGGTTTTCCTTTTTAAGTTAAATTTCAAGGACATGA
TCCAAAAAAAAAAAAAAGAAATATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_p15.g1 MSMg01no190_p15.g1 CHROMAT_FILE:
MSMg01no190_p15.g1 PHD_FILE: MSMg01no190_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:25 2005
         (288 letters)



>mm_chr9_39265596_39266283
          Length = 688

 Score =  327 bits (169), Expect = 5e-94
 Identities = 259/299 (86%), Gaps = 22/299 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcctaaatctgccttactataataaattaagtaaaaattggattct---aaatatgt 57
           |||||||||||||||||||||||||||||||||||||||||||||  ||   |||| |||
Sbjct: 488 acagcctaaatctgccttactataataaattaagtaaaaattgga--ctcaaaaatgtgt 431

                                                                       
Query: 58  gaagaaatttacaagataaataaaactagaaagaaaagacaataaaagttgtacttgaat 117
           ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||  
Sbjct: 430 gaa-aaatttacaagataaataaaactagaaagaaaagacaataaaagttatatttga-- 374

                                                                       
Query: 118 tgattattacttcatattcatgggcttacataaaatagaggggtgtactaatattttcag 177
             ||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 373 --attattactccatactcatgggcttacattaaatagaggagtgtactaatattttcag 316

                                                                       
Query: 178 taatgttgcataataaa----atttgagtaaattcaaaaccccaaattttttatactaat 233
           |||||||||||| ||||    | ||||||||||||| |||||| ||||||| ||||||||
Sbjct: 315 taatgttgcatagtaaacaaaacttgagtaaattcacaacccccaatttttgatactaat 256

                                                                      
Query: 234 caatgttttcattattctttta----tttgctgctaatatatttagaatgctataattt 288
            |||||||| |||| ||    |    |||||||||||||| |||| ||| |||||||||
Sbjct: 255 taatgtttttattactc----aaagatttgctgctaatatttttataatactataattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)