BAC Information

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BAC

Clone NameMSMg01-192D20
Chromosome9 (Build37)
Map Location 90,902,353 - 90,902,772
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192D20.T7 (MSMg01no192_d20.b1)MSMg01-192D20.TJ (MSMg01no192_d20.g1)
ACCAG381983AG381984
length1,2451,250
length of high quality
(start - end)
410 (43 - 452)214 (500 - 713)
definitionCHROMAT_FILE: MSMg01no192_d20.b1 PHD_FILE: MSMg01no192_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:20 2005CHROMAT_FILE: MSMg01no192_d20.g1 PHD_FILE: MSMg01no192_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAACAGTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAAGAGAGAAAGATACTGAAAAAAAAAGACAAATCTAAAATTTGGGA
ATAAAAAAAGATCACTAAAAACAAAACAAAAAACAAAATGCCCCCAATTG
ATGGCTGATGCTCTTCTCTGTACCCAGCATTGTCGTAGCATACAGCACAT
TATAATGTCTCACATTTAGAATGAATTAAGTGTAACAGAATATCAGTACT
GAAGACAACATAGATAATGATGTTTTAGACAACAATGGTAATGAAATAAT
AAAGTGTGTCCAGAACATACTGTCATATGCATGATAATATAAGAACTGAT
ATCAAGATCTACAAGACATTAAAAATCAGATTTATAAACCATTGGCACAG
ATAAGAAAAAGTCTAAGCTAAGGGTTGGAAAACATGATAAATTGTGGCAG
ATTTTTTTTTCCCCCCCGTGGAAAGAGATGGTCTTTCAAAAACAAAAGGA
ATCTAGACTTCAAACAGTGAAGACTAGAATAGGTTCCCCACACATCATGT
TATAATTCAAACATCAAAAATACAAACAATGGCCTACACTGACAGAGTGG
CCAGGAACTAGATACTGAATACCCTCCTCCCACCCCAGTCACACACATGA
AGTAATTCCTAATGATATTCTGCTATACTCATACACTGGTGCCGGCCAGT
GGTCATCATAGAGGGTTGCTCCAGCAGCAGATGTGGGCAGGTGCAAGGAA
TCATAGCCAGACATTTATGCAGAGATATAGTCTATATTGGAGGTCTCTAT
CAGGTCCCTCCTCTAAGAGGTCCCTTTTTTCTAGTGGGACCCAGCAGAAG
CAGAGGAACGATGGTAGGAGTCATAGGGGATGGAGGACCTCAGGAGAACA
TAGCCCACCAAAATCACTAACCAAGGCTCAAATGGGCTCACAGAGATTTA
CTTGTTAAGCACTGTATATATCTACCCCCAGCCCCCTTGAAAAACTTTAT
GGACGCTATCCTTGTGGTTCCTCCCCCTGAAAACCAGGAATCTCTGGACC
TTTTACCGCCCCTTGAAATCTTTTTCCCCCATAAAATTGCCCGGCTCACC
TCTCATAAAAAAACCTTTTCCTCTTCTCCCTTTTCTAACATCGGTTGGGA
CCATTATCTTATCCCCCTCTCCACAACTGTTCTTCTTTTATCCTCTTTTC
ACTTTTCACATTTATTTATTTATACTCTTTAATTCATAAATATCA
NNCCAAAGACGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAGAAACA
CCTGAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAAATCAAAAACT
CAGGTGATAGCAAATGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTC
CATTGTTGGTGGGATTACAAGCTTGTACAACCACTCCAGAAATCAGTTTG
GCGGTTCCTCAGATAATTGGACATAGTACTACCGGAGGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATATATAACCGGTAAGAAGAACACTT
GCTCCACTATGTTCATAGCAGCCGTGTTTATAATAGCCAGAAGCTGTTAT
TTTTCCCCCCCCCCCCTCAACAGAGGATTGGATACAAAAAAGGGGGGACA
TTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACC
CAATCACAAAGGAACTTGCCCAATATGTACTCACTGATAAGGGGATAATA
GCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAACGCA
TGAATTTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTACCCTTTCTT
AGAAATGGGAACAAAACACCCATAGAAGGAGCTACAGAGACAAAATTTGG
AGCTGTGATGAAAGGATGGACCATCTAGTGACTGCCATATACAGGGATCC
ATCCCATAATCAGCTTCCAAATGCTGACAACATTGCATACACTAACAAGA
TTTCGCTGAAAGGACTCAGCTAATACTCTCTCTTGGGGAAAAATGAAGGG
GCCTATCAAAACCAAAATGGAAGAATCCCCGCCGCTTTTGGAAGGGTCCC
CCCCCCCCCCATGGGGGAAGCTGAAAAAATTTCCCCGGGGCTATTGGAAA
TTGTCCCCCCTTATGGGGAAAACAATATAAATTATACACTACCCGGCGGA
CCCTTGGCTTTATTTGCCATTGATCACAAAAGGGCCAATTTTGCCTTCCT
TCCAAAAAAAACCCTCCGGTCTTTGATATTTTTATTCCCCCCAACGGAAA
ACCCTAGGCCCACAAAGTGGAGCGTGGTGTATGAGTTTATCTTTCTAATC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_d20.b1 MSMg01no192_d20.b1 CHROMAT_FILE:
MSMg01no192_d20.b1 PHD_FILE: MSMg01no192_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:20 2005
         (410 letters)



>mm_chr9_90902078_90902887
          Length = 810

 Score =  708 bits (366), Expect = 0.0
 Identities = 401/420 (95%), Gaps = 14/420 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattc-ataagagagaaagatactg---aaaaaaaaagacaaatctaaaatttgggaa 59
           ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 695 ggaattcaataagagagaaagatactgaaaaaaaaaaaagacaaatctaaaatttgggaa 636

                                                                       
Query: 60  taaaaaaagatcacta----------aaaacaaaacaaaaaacaaaatgcccccaattga 109
           ||||||||||||||||          ||||||||||||||||||||||||||| ||||||
Sbjct: 635 taaaaaaagatcactaaaaacaaaacaaaacaaaacaaaaaacaaaatgccccaaattga 576

                                                                       
Query: 110 tggctgatgctcttctctgtacccagcattgtcgtagcatacagcacattataatgtctc 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tggctgatgctcttctctgtacccagcattgtcgtagcatacagcacattataatgtctc 516

                                                                       
Query: 170 acatttagaatgaattaagtgtaacagaatatcagtactgaagacaacatagataatgat 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acatttagaatgaattaagtgtaacagaatatcagtactgaagacaacatagataatgat 456

                                                                       
Query: 230 gttttagacaacaatggtaatgaaataataaagtgtgtccagaacatactgtcatatgca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 455 gttttagacaacaatggtaatgaaataataaagtgtgtccagaacatactgtcacatgca 396

                                                                       
Query: 290 tgataatataagaactgatatcaagatctacaagacattaaaaatcagatttataaacca 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 395 tgataatataagaactgatatcaagatctacaagacattaaaaatcagatttataaatca 336

                                                                       
Query: 350 ttggcacagataagaaaaagtctaagctaagggttggaaaacatgataaattgtggcaga 409
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttggcacagagaaggaaaagtctaagctaagggttggaaaacatgataaattgtggcaga 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)