BAC Information

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BAC

Clone NameMSMg01-199F16
Chromosome9 (Build37)
Map Location 24,877,778 - 24,877,967
singlet/doubletsinglet
Overlap genenone
Upstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960
Downstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199F16.T7 (MSMg01no199_f16.b1)MSMg01-199F16.TJ (MSMg01no199_f16.g1)
ACCAG386322AG386323
length719730
length of high quality
(start - end)
190 (39 - 228)241 (82 - 322)
definitionCHROMAT_FILE: MSMg01no199_f16.b1 PHD_FILE: MSMg01no199_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:53 2005CHROMAT_FILE: MSMg01no199_f16.g1 PHD_FILE: MSMg01no199_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCAGAAGGAGGGCGGAATTCCAGGACTTCCCGATTAGAGATATCTCCT
CCTTAGACATGTCCCAGGGGAAGGCATAGCAGCTTGTTGGCAGCATCCTT
CTATGACTGAGAAGTTTCTGAGGCTGCAGTTCCCAGCTCTGACAGATCCA
TCAGGAAGGCAGAAACCCACTCAGACCCACATCACATCACTCCATGGAAT
TTAGTGGTGTGGGGTTGGCAAAGGGGACACTTATGACATGCTGTGCCATA
AGCTATAATCTGCCCAAATATACTTGGGGTTGTTATTTTCTTCTCTGACA
ACGAAATATTATTAGGTCCTTCATCACTTCGAGAGCCACCGAATGACTTG
TGACATACGTCTATGTTCCCTAGATCTGCACCACCCCCCCTCTCGGATGA
AGCATTACTCTTTCTTGATACTGACTTATCCTTCTTCCCTCACCTTGTTT
CTTCCTCTCCTCTTCCTTATCCTCTTCCTCTCTGAATCTGTGCCTTCTTG
CATGCCCGCGTCCCCTTGATTCTCGACTATGCCTCCCTTTGCCCTTCGCC
CTGTACCCGTTTTGTTTCTTCCTGTTCTCTACCTTTCTGCCCTTTTTCCC
ATTTCCCTTCGATCCCCCCTCCTTTCTTTTCTTTCCTCTTCCTCTCCTCT
TTGTTTTTTTTTTTCTTTCCACTTCTTTTTGTTACCTGACCTACTTCCTC
TTCTTCTTTTTTTCTCTCC
CTTCCTCGCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCCAAACAGAAATTCATCTGGAATAACA
AAAAACCTAGGATAGTAAAAATCTTCTCAAGGATAAAAAAACTCTGGTGT
AATCACCATGCCGGACCTAAAACTGTACTACAGAGCAATTGTGATAAAAA
CTGCGTGGTACTGGTATAGTGACAGACAAGTACACCAATGGAACAGAATT
GAATACCCATAAATGAACCCACACACCTATGGTCACTTGATCTTTGACAA
GGGAACAAAAACCATCCAGTGTAAAAAATATATCATTTTCAACAAATGGT
GTTGGCACAACTGGCTTTTATCATGCAGAACAATGCAAATCGATCCATTC
CTATCTCCTTGTACTAATGTCACACCCAAGTTGATTAAGGATCTCCACAT
AAAATCTGAGACTCTGAAACTTATCGAGTAGAAAGTAGTGAAAACCCTCA
CATATATGGGTACTGCATAACAATTCCTGAATAGATTAATAACGGCTTGC
GCTGTAACACTGATAATCTACCATTGTTCACTACTACATTTGCTAAGCTT
CTGCTTTTCTCTTAACTCTTTCCTTTGTTAAAATATATATACCTATTTTC
CCCCCCTATGTTTTTCTTATTTTCAATACTTTTACCCCATTCTTTACCTA
TAGTATTTTCACTTTATCCCCATCACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_f16.b1 MSMg01no199_f16.b1 CHROMAT_FILE:
MSMg01no199_f16.b1 PHD_FILE: MSMg01no199_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:53 2005
         (190 letters)



>mm_chr9_24877578_24878167
          Length = 590

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagatatctcctccttagacatgtcccaggggaaggcatagcagcttgttggcagcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatatctcctccttagacatgtcccaggggaaggcatagcagcttgttggcagcatcc 260

                                                                       
Query: 61  ttctatgactgagaagtttctgaggctgcagttcccagctctgacagatccatcaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctatgactgagaagtttctgaggctgcagttcccagctctgacagatccatcaggaag 320

                                                                       
Query: 121 gcagaaacccactcagacccacatcacatcactccatggaatttagtggtgtggggttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagaaacccactcagacccacatcacatcactccatggaatttagtggtgtggggttgg 380

                     
Query: 181 caaaggggac 190
           ||||||||||
Sbjct: 381 caaaggggac 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)