Query= MSMg01no199_k05.b1 MSMg01no199_k05.b1 CHROMAT_FILE:
MSMg01no199_k05.b1 PHD_FILE: MSMg01no199_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:16 2005
(322 letters)
>mm_chr9_69555384_69556107
Length = 724
Score = 400 bits (207), Expect = e-116
Identities = 294/323 (91%), Gaps = 6/323 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctcaacagtaccctcactagcaaagcttttgaaattaagggttcctaggagt 63
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcaacagtacccccactagcaaagcttttgaaattaagggttcctaggagt 263
Query: 64 gtgccctcattacttacttctgttcctgtagctgttgccatctttc-atacatagtccaa 122
|||||||||||||| |||||||||||||||||| ||| ||||||| ||||| |||||||
Sbjct: 264 gtgccctcattactgacttctgttcctgtagctattgacatctttgtatacagagtccaa 323
Query: 123 g-tttatcagtgtagcctattggccaccagaaagactaaagggaacaatatgaatggctt 181
| ||| | |||||||| | |||||||||||||||| |||||||||| | ||||||||||
Sbjct: 324 ggtttttg-gtgtagcccactggccaccagaaagacaaaagggaacagtgtgaatggctt 382
Query: 182 agcacaaatacttcctcactaagaaagaaaaatataga-a-tacaatgtcccagagatag 239
|||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct: 383 agcacaaatacttcctcactaagaaagaaaaa-atagagactacagtgtcccagagatag 441
Query: 240 gagagctggcatctcctttgcatgggaataaagcaagctaaatatgatctttgttcccca 299
|||||||||| ||| ||||||||||||||||||||| || | |||| ||||||||||| |
Sbjct: 442 gagagctggcgtcttctttgcatgggaataaagcaaactcactatggtctttgttcccta 501
Query: 300 cgattattcacacaacatttgac 322
| |||||||||| ||||||||||
Sbjct: 502 caattattcacaaaacatttgac 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 724
Length adjustment: 9
Effective length of query: 313
Effective length of database: 715
Effective search space: 223795
Effective search space used: 223795
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_k05.g1 MSMg01no199_k05.g1 CHROMAT_FILE:
MSMg01no199_k05.g1 PHD_FILE: MSMg01no199_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:16 2005
(243 letters)
>mm_chr14_56618721_56619362
Length = 642
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 3 ttttttttttttaacctaatttaaacatttaatggttcagggaagcataatctcagcaca 62
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 ttttttttttttaacctaatttaaacatttaatggttcagggaaggataatctcagcaca 262
Query: 63 atgtaaagccaagggtcaggtgatccctctttgctttttcaagaaaggagggatgaaggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtaaagccaagggtcaggtgatccctctttgctttttcaagaaaggagggatgaaggc 322
Query: 123 atgatcaaaattatggctgacaacttggactcatgtgagttacttgtgggtcattttgta 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 atgatcaaaattatggctgacaacttggactcatgtgaattacttgtgggtcattttgta 382
Query: 183 ggtatactggcaggtgaaatgttggaagcaaacccactgttcttagaaacaacagtatgc 242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggta-actggcaggtgaaatgttggaagcaaacccactgttcttagaaacaacagtatgc 441
Query: 243 t 243
|
Sbjct: 442 t 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
