Query= MSMg01no201_l15.b1 MSMg01no201_l15.b1 CHROMAT_FILE:
MSMg01no201_l15.b1 PHD_FILE: MSMg01no201_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:09 2005
(242 letters)
>mm_chr9_23654409_23655050
Length = 642
Score = 398 bits (206), Expect = e-115
Identities = 233/246 (94%), Gaps = 8/246 (3%)
Strand = Plus / Minus
Query: 1 agatgagagtactagtgatgtacagaatggggaagatcctaccctgcctccatgtcttgt 60
||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct: 442 agatgagagtactagtgatgtacagaatggggaagatactagcctgtctccatgtcttgt 383
Query: 61 tgtatctcttatacaaaagctcatataataatttcaaatgttttaagaatatgttttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtatctcttatacaaaagctcatataataatttcaaatgttttaagaatatgttttcag 323
Query: 121 agataagcatataaattaatgtttgccatgggcaaatgttcattaggaaaactgt----t 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 322 agataagcatataaattaatgtttgccatgggcaaatgtttattaggaaaactgtgagct 263
Query: 177 ttttataaaaaacatgtatacggtatctgccatgggctacaaactttatagttgtttctc 236
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ----ataaaaaacatgtatatggtatctgccatgggctacaaactttatagttgtttctc 207
Query: 237 atataa 242
||||||
Sbjct: 206 atataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no201_l15.g1 MSMg01no201_l15.g1 CHROMAT_FILE:
MSMg01no201_l15.g1 PHD_FILE: MSMg01no201_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:09 2005
(635 letters)
>mm_chr9_23577985_23579019
Length = 1035
Score = 1046 bits (541), Expect = 0.0
Identities = 610/633 (96%), Gaps = 2/633 (0%)
Strand = Plus / Plus
Query: 4 ggttccagtagacactgactgttcccaaatatataataatgtggtcccagaagttatgat 63
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggttccagtagtcactgactgatcccaaatatataataatgtggtcccagaggttatgat 263
Query: 64 ggaactatagctctaatcacatatccccagatagtataaagacttcagtgggtctgttta 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaactatagctctaatcacatatccccagatagtataaagacttcagtgggtctgttta 323
Query: 124 gtatctgtccttcagcaggag-tgtccaagtacttgacttcatttggtttccttggcaat 182
|||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 atatctgtccttcagcagg-gatgtccaaatacttgacttcatttggtttccttggcaat 382
Query: 183 tagtgtacagccctaccttttgttctcttgtaatagagccaaggcaagacatttgtcagt 242
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 383 tagtgtacagccctaccttttgttctcttgtaatagagccaaggcaaaacagttgtcagt 442
Query: 243 caacatagagtctcagcatgcagttgaactgcatgcagatatccctctaagaagaatcac 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 caacatagagtctcagcatgcagttgagctgcatgcagatatccctctaagaagaatcac 502
Query: 303 agaaaatcaaatatccctagtggctgaaaacccgccatattaaaagcaaaaggaaaaccc 362
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct: 503 agaaaatcaaatatccctaatggctgaaaacatgggatattaaaagcaaaaggaaaaccc 562
Query: 363 aatccaggagattcataaaacaaaataaagaagcataaaaatatggcatgttcaccatcc 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 563 aatccaggagattcataaaacaaaataaagaagcataaaaatatgacatgttcaccatcc 622
Query: 423 agggccaaccaacttgttaaggaacccaaagctacaaacaaaggttaaataactaagaac 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 623 agggccaaccaacttgttaaggaacccaaagctacaaacaaaggttaaataactgagaac 682
Query: 483 taattcaagaatttacttttaaatgaaattcataattatatagaagatccaaacaaacat 542
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 683 taattcaaggatttacttttaaatgaaattaataatcatatagaagatccaaacaaacat 742
Query: 543 gcatgagtggaagaaatctatcaaatatattgacaaaacagtttccaaagtgaatgcaca 602
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 743 gcgtgagtggaagaaatctatcaaatatattgacaaaacagtttccaaagtgaatgcaaa 802
Query: 603 agtcagtaaactggattctcagatccaaaatat 635
|||||||||||||||||||||||||||||||||
Sbjct: 803 agtcagtaaactggattctcagatccaaaatat 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
