Query= MSMg01no201_n22.b1 MSMg01no201_n22.b1 CHROMAT_FILE:
MSMg01no201_n22.b1 PHD_FILE: MSMg01no201_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:24 2005
(310 letters)
>mm_chr9_92284735_92285444
Length = 710
Score = 574 bits (297), Expect = e-168
Identities = 303/305 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttccatccaccagctctgcagtttctcatcctcggctctttatagaccttgtc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaattcttccatccaccagctctgcagtttctcatcctcggctctttatagaccttgtc 449
Query: 64 atctgttaccacctcacttctggcctgctgttttctaaagcccttatgatgcccgtgctt 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctgttaccacatcacttctggcctgctgttttctaaagcccttatgatgcccgtgctt 389
Query: 124 caccatcatgttgctgccaccatcacaccatcatgactgccacagttcgaccgctgctgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caccatcatgttgctgccaccatcacaccatcatgactgccacagttcgaccgctgctgc 329
Query: 184 tgtagttctctcttatgttactatctcagcatattctactaatgatcgagctcaaatgta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtagttctctcttatgttactatctcagcatattctactaatgatcgagctcaaatgta 269
Query: 244 actgaaaaatacccactcaacagacaccttttattgagcagaatgttacagaaccataac 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 268 actgaaaaatacccactcaacagaaaccttttattgagcagaatgttacagaaccataac 209
Query: 304 atagg 308
|||||
Sbjct: 208 atagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_n22.g1 MSMg01no201_n22.g1 CHROMAT_FILE:
MSMg01no201_n22.g1 PHD_FILE: MSMg01no201_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:24 2005
(283 letters)
>mm_chr9_92138524_92139206
Length = 683
Score = 495 bits (256), Expect = e-144
Identities = 276/286 (96%), Gaps = 7/286 (2%)
Strand = Plus / Plus
Query: 1 cagtcagctcagaggcaactcagagagtaaatgtggtatttgtctgagtctggcttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcagctcagaggcaactcagagagtaaatgtggtatttgtctgagtctggcttcttt 260
Query: 61 tccttagcaagagaattcacacttatatccactattttggaaaatggtagattttttttt 120
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 261 tccttagcaagagaattcacacttatatccactgttttggaaaatggcagattttttttt 320
Query: 121 cttcttttcaggttgataaaactcaatttt---aaaaaaaaaaaaaaaagaagaagaaga 177
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 321 cttcttttcaggttgataaaactcaatttttataaaaaaaaaaaaaaaa----aagaaga 376
Query: 178 agactaacgttgtcctcactttgacatcctacaagattgcagattaggtcaatctagctc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agactaacgttgtcctcactttgacatcctacaagattgcagattaggtcaatctagctc 436
Query: 238 ttttccaaatctcctctgtgatgttttctgaattagagcatggtcc 283
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttttccgaatctcctctgtgatgttttctgaattagagcatggtcc 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
