BAC Information

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BAC

Clone NameMSMg01-201O15
Chromosome9 (Build37)
Map Location 80,000,410 - 80,000,725
singlet/doubletsinglet
Overlap geneLOC100041249
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6
Downstream geneMyo6, Impg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201O15.T7 (MSMg01no201_o15.b1)MSMg01-201O15.TJ (MSMg01no201_o15.g1)
ACCAG387275AG387276
length1,2641,175
length of high quality
(start - end)
416 (30 - 445)59 (336 - 394)
definitionCHROMAT_FILE: MSMg01no201_o15.b1 PHD_FILE: MSMg01no201_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:30 2005CHROMAT_FILE: MSMg01no201_o15.g1 PHD_FILE: MSMg01no201_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCATTCGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
ACCTCGTTATTGCTTCAGATAGAGTAAGAATTGTTTCTCAGCTGTGTGCT
GAGAAGAGTTAGTGGCAAAGAACACCCTCTACAGCAAGAGCTGTATTTTA
TTATTATTTACATCCCAAATGTTGCCCCCCCTTCCGGTCCTCCCTCCCAG
ATTTCTTCGCCTATTCCCCTCCCCTTCACCTCTGTGAGGGTGTCCCCCTT
CCCTAGGGCATTATGACTCTATAGGATTAGGCGCATCCTTTCCAATGAGG
CCAGACTAGACAGTCTTCTGCTACATATATGCCGGGGGTGGGGGGAAAGA
CATGGACCAGACTGTGTATGCTCTTTGGTTAGTGGTTTAGTTTCTGTTTA
TCTCCCAGGAGTCCAGGTTAGTTGATACTATTGGTCTTCCTAGGGGTTTT
TTTTCACCCCCCAACTGTATTTTCTACACCGCCAAATGAGTCAACCAGCA
ATGTCTCTTAGGTCTAAAGCTATTGCCTACACTAAACTCCAGTTAATGAA
TTCAGTCTTGTCCTGGGCTTTCTTGGTTACATAGTAACTGGAAATTATGA
CTAGTTGTATCTATAATATAATTTCTTCTGAAGCTATCCATTTGTACCCT
AGCCCTATTTTATGGAATAAAATCTGAACAGCTGTTAACATACCCTACTA
TTACTTTTCTATTTGCTATTTTTTTCCAATACTTGTTCTATTACTCTCAC
CCCAGTTTTTATTTTTTAGTTCTTTTTGTTTTACTCTTTTTCTCTCATCT
ATCTTTTTTTATTTCTCTGTCTTTTCTATTTCTTTTTAATTTTTTTTTTT
TTTCTTCTCTCTTCTATTTTTCTTCTTTTTTTTACTTCTTCTATCCTTTT
TTTTCCTTCTTTTCTTTTTTTTTTTTTCTCTTTTTTTATTTCTTATCTCT
TTCATTCCCTCTCTTTTCTTTCCTTTCTTTTATCTTTTTTTCTTTTCTCT
TTATTCTCCTTTTTTTTCTTCTTCATCATTTTCTCTTCTCTATTCCTTTC
TTCTTCTCTCTCTTTCTTCCTTCTTTTTATCNCTCTTTTCTATTTTTCCT
CCTTCTTCTCTTTCTTATTCTTNCTTCTTCCTTCCTTCCTCCTCTCTTTT
ACTTCTCTCTTCTTTCCTCTTTCTACTTCTCTCTTTTCTTTCTTTAATCT
TCTTTACTTTTCTCCCATCACTCATTTCACTTCCTCTATTTGTCTTCCTT
CTCTTTTACTGTCT
NNNNTTAAAGATGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCTTTTAGCCCCCCCCNGNANNNNNNAGANNANNN
NNNNGCCCTTTAAAACTCCCNANANCAGNAGANANGCNAAGGGAAGGAGG
AAANCNCAAAGACCNACAAGGAAGGGAGGACGGNGAAGAGAGAGAGGANN
NACNCNNCNGAGGGANGAGCCCCCGGANGGCNNACNCAANANGNAGGGAN
CAGCCGGAAANCGNACACAGGCAAGCAACACNAAAGGGANNGGGCCGGNG
GCANNNANANAGGNANGNGCANATTTTTATATAACAATAATAAAGAAAAT
AAGGCCATCCATTTGAGAGGGAATGAGAAAGTTAGGGAAGGAATTTTTTT
TTTAGAGANNANCNAANNAACNGNANNNNAAGGGNAAACAAAACCCCCCC
ANAANNNNCCCCCCCCCANGNCAGCCNCCGGNAGCAGAGAAAACAGGACG
GNGCCNCCNACAAGGCAAGANCAAGGCAAGCCGGGGGCACACACACACAC
ACACACACACACACACCCACACAACACACAAAAGCAAAAGAANCCAAAAC
AAAGACGGCAGCAAGCCAGAAAACCCGAANNCCACCCCCNGAACCCANAN
NAAAAAAAAANAAAGAAAAACACAGAGNAGAGGAAGCACCAAAAAGCCCA
CAGAGNAGCCGGACACAGAGAGGCACAAGAGCGACCCCGGAACAGGAAAA
AGCCGGANACAAAAGGAAAGGGGTAGAATTGGAGAAGAGAGACAGAAGAG
AAAGGCAAGGGCAAGCACAGGAGGAACAAAGAGAAAGAACAAGGACCGCA
AGAAAGGGCGAAAAAAAGGACGGAAAACAGGAAAAGAGAAGANGGGGGGA
CAACAGGAGACAAGGAAAGAAAAAGAAAAAAAGGGAAAGAGGAGGGGGAA
GAAAAGGAAGAGAGGAAGAGCAGAAACGAAGAGAAAAAAAAACAGAGAAG
AAGAGAACGAAGACACGGGGCCGGGAAAGAAGAAAAAGGAAACAAAAAAA
AAAAGAAGACAAAACAGGACGAAGAAAAGACCACACAAAAAAACAAAAGA
GAAACAGAGAACAAAAGAAAAAAACACAACAGAAGAGGAGAAANGAAAAG
GAAGCGGAAGAGCAAGGGAAAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_o15.b1 MSMg01no201_o15.b1 CHROMAT_FILE:
MSMg01no201_o15.b1 PHD_FILE: MSMg01no201_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:30 2005
         (416 letters)



>mm_chr9_80000410_80001225
          Length = 816

 Score =  528 bits (273), Expect = e-154
 Identities = 305/317 (96%), Gaps = 4/317 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcacctcgttattgcttcagatagagtaagaattgtttctcagctgtgtgctgaga 75
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 316 gaattcacgtcgttattgcttcagaaagagtaagaattgtttctcagctgtgtgctgaga 257

                                                                       
Query: 76  agagttagtggcaaagaacaccctctacagcaagagctgtatt---ttattattatttac 132
           ||||  |||||||||||| | | ||||||||||||||||||||   ||||||||||||||
Sbjct: 256 agaggcagtggcaaagaaaagcatctacagcaagagctgtattttattattattatttac 197

                                                                       
Query: 133 atcccaaatgttgcccccccttccggtcctccctcccagatttcttcgcctattcccctc 192
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atcccaaatgttg-ccccccttccggtcctccctcccagatttcttcgcctattcccctc 138

                                                                       
Query: 193 cccttcacctctgtgagggtgtcccccttccctagggcattatgactctataggattagg 252
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 137 cccttcacctctgtgagggtgtcccccttccctagggcattacgactctataggattagg 78

                                                                       
Query: 253 cgcatcctttccaatgaggccagactagacagtcttctgctacatatatgccgggggtgg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  cgcatcctttccaatgaggccagactagacagtcttctgctacatatatgccgggggtgg 18

                            
Query: 313 ggggaaagacatggacc 329
           |||||||||||||||||
Sbjct: 17  ggggaaagacatggacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)