BAC Information

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BAC

Clone NameMSMg01-202K16
Chromosome9 (Build37)
Map Location 71,113,432 - 71,113,719
singlet/doubletsinglet
Overlap geneAldh1a2
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202K16.T7 (MSMg01no202_k16.b1)MSMg01-202K16.TJ (MSMg01no202_k16.g1)
ACCAG387736AG387737
length1,119717
length of high quality
(start - end)
---289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no202_k16.b1 PHD_FILE: MSMg01no202_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:33 2005CHROMAT_FILE: MSMg01no202_k16.g1 PHD_FILE: MSMg01no202_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGCGGTCAGGGGGGGAGGAGGGGGAGGCGGGGGGGGGGGGTNTC
TAGGAAAAGANNGAAAGAAAAAAGAGGAAGAGGGGGGCCGGCGGAANACG
GACTNCNCTANTTGCGGNNGACGGAGGGGGNNNNNNNNNNNNNNNNNNNT
ATGCAAAAAAAGAAGGGGNNNNNNNNNNNNNNNNNGNNNNNNNNNGNNNN
NNGNNNNNNNNNNNNNNTTTTTTTTGGGCGANGNGGAAGGGGGGAGGGNN
NNNNNGNAGGAGGGGGGNGGNGNNGGGGGGGGGNNGGGGGGGGGGGAAGA
AGNNAAAAAAAGGGGAAGGGGAAGNNAGAAGAAGGNNGNGGGNGGGAGGG
GGNGGAGGAAAGAGAGAAGAGANNNGAAAGAAGAGGAGAGGGGAGTTTTG
TTGTAGAAGGGAAAAGAGAGGGGGTGGTGGGAGAAGNGAGAGGATGGAGA
GAATAAGGTGANGAGAAGAAGGGGGAAANGANGTATTTTTGGAATGGGGG
TATTGGAGGNGGAGNNGGAGAGGGAGAGAANGGAAGGAAAAAGTTGTTAG
GGTGGGGTTTTCCACGCCACGCACACCCCGCGGAGGGAGGGGANGAAGGA
GGAGGGGGGGGGGNGGGGGGGGGGGGGGGNNCAAAAAAAAAAAANNAAAA
NNNAAAAAAANNGGGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNN
NNNCCCCCNCNCNNCCCNCCCCCNCCCCNCNCCCCCCCCCGGCCNCNCNN
CCNCCCNNCCNCNNCNNNNCCNNNNCNNNNCCCCCCCCCCCCAAACNCCN
CNCNCNCCCCCCCCNCCCCCNNNCCGCCCGGGCCCGGGGGGNCGGNGGCG
GGGGGGGGGGGCGGGGGGGGGGNGCGCGGGCCGGCGGGGNCGGGGGGGGG
GGGGGGCGGGGAGGNGGGGGCGGGCNGGGGGCGGGGCGGGGGGGGGCGGG
GGCGNGGGGGGGGGGGCGGGGAGGGGGGGCGGGGGGNNGGGCGGACAGAG
GGAGGGGAGAAGGTTGTGGTGTTTGTTTTGTGTTGTGATAGGAGAACGAG
GAGAGAGGGGAACAACGAGGGGAGGAGAGAGAAGGATGGGTGAGAGAGAG
GAGTGGGGAAGAGGGGGAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCCAATAGCTTGCTTTGTGGATAT
TACTTTCTGGTTTGATTCTAATTGGATGCAGGTGTTTCGTTAGCATCTAG
TCTGAAGCAAATACTTTTAAAACAACAGACTCAGTGCACCCAGAAGAATA
TGTCTCTTTCACACTCGCATTTTGGGTTGCATGTTCCATACATTTGATAG
CAAGTAAAAGTCAAATAAAAGTTTGGAAGCAGAGAATGTAAATTAGCATG
CAAGTCTATTTAGCTTACACATAAATAGTAAGAGACCGTTTAACTAAATA
TCATTAATTTTGTTTCACCTGACCCCCCCACATCTCTAGATCTCTCTGGC
AGGTATGCTGGCCACTGCCCACCTGTCTATCTGCCTACAGAATGTTTGAA
ATACAGCTAATGACACTGAGCTGCGGTATGAATGTAATTTGTCCACTATA
TCTCATAGACTTCACCAGGCAAAGAGAATGTAAAATGTGTATTTAGTAAT
TTTAAAGAGAGGCTGAAATGATGTTTTAAACATATGCATTACCCTCGATG
TTTACCAATTTCATATGTTCCCCATTCCCCTACTTTGAATGACCCATCCT
GTCCCCATTTTTTTCCCCAATTTTGCCTTTGTATTTCTGTCCCTCCCCCC
TCTCTTTTGCTGTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_k16.g1 MSMg01no202_k16.g1 CHROMAT_FILE:
MSMg01no202_k16.g1 PHD_FILE: MSMg01no202_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:33 2005
         (289 letters)



>mm_chr9_71113232_71113920
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccaatagcttgctttgtggatattactttctggtttgattctaattggatgcaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctcccaatagcttgctttgtggatattactttctggtttgattctaattggatgcaggtg 429

                                                                       
Query: 61  tttcgttagcatctagtctgaagcaaatacttttaaaacaacagactcagtgcacccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttcgttagcatctagtctgaagcaaatacttttaaaacaacagactcagtgcacccaga 369

                                                                       
Query: 121 agaatatgtctctttcacactcgcattttgggttgcatgttccatacatttgatagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agaatatgtctctttcacactcgcattttgggttgcatgttccatacatttgatagcaag 309

                                                                       
Query: 181 taaaagtcaaataaaagtttggaagcagagaatgtaaattagcatgcaagtctatttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaaagtcaaataaaagtttggaagcagagaatgtaaattagcatgcaagtctatttagc 249

                                                           
Query: 241 ttacacataaatagtaagagaccgtttaactaaatatcattaattttg 288
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttacacaaaaatagtaagagaccgtttaactaaatatcattaattttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)