BAC Information

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BAC

Clone NameMSMg01-203E24
Chromosome9 (Build37)
Map Location 61,655,597 - 61,826,080
singlet/doubletdoublet
Overlap geneRplp1, Kif23, Paqr5
Upstream geneUaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3, LOC100039851
Downstream geneGlce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203E24.T7 (MSMg01no203_e24.b1)MSMg01-203E24.TJ (MSMg01no203_e24.g1)
ACCAG388131AG388132
length756777
length of high quality
(start - end)
237 (129 - 365)267 (76 - 342)
definitionCHROMAT_FILE: MSMg01no203_e24.b1 PHD_FILE: MSMg01no203_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:25 2005CHROMAT_FILE: MSMg01no203_e24.g1 PHD_FILE: MSMg01no203_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,655,597 - 61,655,833)(61,825,814 - 61,826,080)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAACTCTTCTCTGTCTGGGAGTGGCAGGAGCCTTGGGTGGCAA
AGACTCGAGGGTTAGGATGTTAGGCCCTGGCTAAAGTCATTGGGTACTGT
CTCCGGTGTTCCAGCTCAAATCTGGTGTCTAGGACTGGTGATTGTGGCAC
CGGAAGCCCAAGCCTTGTGCCTTCCCCAGTCTACAAATAGTCTGTGTACC
ACACACCCCATCAAGTACAAAGAGGGACTCTACAGTGTTCCATGAAGAAC
CAAGACACAGCCTGTTCCCCCACCAATCTGCCACATGCCCTCCCACAAAC
CCAGCCTTGTCCACGTATTTGTGTCAAGCTCACCCAGGTCCATCCTTGGT
GGTACAGAATAAGAAGCCAACTTCTCTACAGACTTCTATAAATAGGTACA
TCTTTCTGGTAAGGTCACCACTCATATCCACGATAGCCCAAAATTCTCTA
AAGACAAACATGGCACATGAGCTGAGACCCAGTCACCTCACTTCTTGAGG
TCAGGCCGGACGGTGGTCATAGCTGTTTGTTCAGCTGCTGTATGGCCTTC
GTCCTGCACAAATACTTTGCCATTGCGTTTTCTTTTCCCCTTTTCTGCCG
CCGTGCATTTTATCCACCTTCTTTTTATTTTCTCCCCTACTTCTCCTGTT
ATGTCACTCTTTTTCTTTTTTTCTCACCCCCGTATTCCCTCTTTTATTTC
TAATTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGACCAGAACAGCGAGAGGTGGGG
GCAGCTGTATTCTGTACAGGGCTTTCCTGTGGGTGGAACCCAAGGCTTCA
TGCGTGCTAAGCCAGTGGGGCTCCTGCAGCTTCCCCTCCTCCCACAAGAA
AGCAAAGTGGAAGCCTGAGAAAGTGTTGTGACTTGACTTCCCTCATGGAG
ACTAAATACAGAGTGCCACTGTAATCATTTCTGTTAGCCCACTGCTGTAT
AATTAGTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCGTTTCCC
CCTTTTTCCCTTTTTTTTTCCCCCCCCCCCCCCCCCCTCNNNNTNTTTNT
TTTTNNTTTTTTNNNCCCCCCCCCTTCAAAAAAAAAAAAAAACACCTCGC
GCGGTGTGGCCCCCTTTCTTTTTTCCCCCTTTTCCCTTTTCCTCTTTATT
TCTCTCCTTTTTCCTTCCCTTTCCCTCTTCCCTCTCTTTCTCCCTCTTTT
TTCCCCTTTTCTTTCCTACCCTTTTCCTCCCTTTTTTTCCTTTCCCTTCT
CTCCCTTCTCTTACCTTTTCCTTCTTCCCCCTTCTCTTCCTTTTCCTCCC
ACTTTTCCTTTTTCCCCCAACCCATTCTTATTTTTTCTTTCTTATTTCCC
CTCCCTCCTCTTTCCTCTTCCTTTTCCTTTTTTCCCCCCCTATTTTCCCC
TTCCCCTCCTTATCCTTTTTCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_e24.b1 MSMg01no203_e24.b1 CHROMAT_FILE:
MSMg01no203_e24.b1 PHD_FILE: MSMg01no203_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:25 2005
         (237 letters)



>mm_chr9_61655397_61656033
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctaaagtcattgggtactgtctccggtgttccagctcaaatctggtgtctaggactgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ggctaaagtcattgggtactgtctccggtgttccagctcaaatctggtatctaggactgg 260

                                                                       
Query: 61  tgattgtggcaccggaagcccaagccttgtgccttccccagtctacaaatagtctgtgta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgattgtggcaccagaagcccaagccttgtgccttccccagtctacaaatagtctgtgta 320

                                                                       
Query: 121 ccacacaccccatcaagtacaaagagggactctacagtgttccatgaagaaccaagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacacaccccatcaagtacaaagagggactctacagtgttccatgaagaaccaagacac 380

                                                                    
Query: 181 agcctgttcccccaccaatctgccacatgccctcccacaaacccagccttgtccacg 237
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctgttcccccaccaacctgccacatgccctcccacaaacccagccttgtccacg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no203_e24.g1 MSMg01no203_e24.g1 CHROMAT_FILE:
MSMg01no203_e24.g1 PHD_FILE: MSMg01no203_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:25 2005
         (267 letters)



>mm_chr9_61825646_61826312
          Length = 667

 Score =  501 bits (259), Expect = e-146
 Identities = 265/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaccagaacagcgagaggtgggggcagctgtattctgtacagggctttcctgtgggtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 435 ttgaccagaacagcgagaggtgggggcagctgtattctgtacagggctttgctgtgggtg 376

                                                                       
Query: 61  gaacccaaggcttcatgcgtgctaagccagtggggctcctgcagcttcccctcctcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaacccaaggcttcatgcgtgctaagccagtggggctcctgcagcttcccctcctcccac 316

                                                                       
Query: 121 aagaaagcaaagtggaagcctgagaaagtgttgtgacttgacttccctcatggagactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagaaagcaaagtggaagcctgagaaagtgttgtgacttgacttccctcatggagactaa 256

                                                                       
Query: 181 atacagagtgccactgtaatcatttctgttagcccactgctgtataattagttcctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atacagagtgccactgtaatcatttctgttagcccactgctgtataattagttcctgtgt 196

                                      
Query: 241 gtgtgtgtgtgtgtgtgtgtgtttgtg 267
           |||||||||||||||||||||| ||||
Sbjct: 195 gtgtgtgtgtgtgtgtgtgtgtgtgtg 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)