BAC Information

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BAC

Clone NameMSMg01-203J03
Chromosome9 (Build37)
Map Location 44,592,209 - 44,592,442
singlet/doubletsinglet
Overlap gene1500035H01Rik
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1
Downstream geneTmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203J03.T7 (MSMg01no203_j03.b1)MSMg01-203J03.TJ (MSMg01no203_j03.g1)
ACCAG388287AG388288
length749748
length of high quality
(start - end)
234 (123 - 356)294 (60 - 353)
definitionCHROMAT_FILE: MSMg01no203_j03.b1 PHD_FILE: MSMg01no203_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:46 2005CHROMAT_FILE: MSMg01no203_j03.g1 PHD_FILE: MSMg01no203_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGT
TAACCACAGCGAAAGCACGGTAGGGTCCGACTGCTTTGTCGATGGTTCAT
CTAACACCAATATTTCCCCCGTGGTCAGGCTTTCCATCGGGACGTGGCAC
CTGGTTCAGAGAAAGGCTAAGATCACTGGACTAAGCCCTACTGAGAATGA
ACTCACATGATATATGAAGCACAGACATGGGACTAACTTCACGGTTAGGT
AGGAGACAAGCACAGAATACTGTATCACATAACACACTGAGTGGAATCTG
GAGGAACTCCAATGCAATGAGCACTATTAAGGCAGTGAATGCTCATTAGA
GAAACTATATTTTTCTATTCACCCCCCCCACCGAACTGGAACCAACCCCA
GGGGACACATTTTTTACCCACGCACCATCTGTACCTTTAAAAATGCATCG
ATATCCCCAACAGCTGGGATAAAATCAGGAATGAAAGGTTTCAGTTTGTG
GTCCAGATCGATCAACTGAGGTGTGTACCTGCCAGGGGCAGTTGAGGGAA
AATGGAAGCAGTCAGAAAATGTCATTTGACTGGGCTAAAAAGCCCCAAAG
GAGCTTGTTGCTGCTTCAGACTCGAGAGTGTAAAGGCCCGGGCTCGGCAG
GTGAGGTGTGGACAGACGGCTCTCCGGCTTACCGGTTGATGCACTCCGAG
AGCTCCTTGATCTCGGCCGACACTGCCAAATGCTCGTACTCCGTAGGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAGACCAAGGGAAAATCCCATTTTCAAGTACAGGGATGTG
TACTTATCTGCCCCCCATTTGATCTGAGGCAGGTGGATCCAAGTCTTATG
ACTTTTTGATTCCCTGAAGCTTATGCGAATTTTAGTTTACAAAACAATGT
ACATTAGTATTTACCATTGTATTGAAATCCATATTTTAGAAAAAGCAGTT
AACAGGTGTCTGTAAGACCATAGGAATAGACTTATGCCTTTGAAACCTAG
CAAAAGCTATAGTTTTACGTAAAAGGCACGGAACGTTGTTCTCCCCCCCC
CATTATTTCTGTGCAACCCTGGCTTTAGGCATGGAGCATTCTTTTCTCAG
TCCCCACCCCTAGATATGTAGACTTATCCGAGACGTTTTCAGAGTGATGA
GAAACACCCTTAAGTCTACATTCAGAAGACAACTAAAGGGGATTTAAAAT
CTTGAGCTTATGACTGAATTGTAAGCAGCCAGTGCTCCATTAGCTGTCAT
AGTCAAAGCTGCCGTAACCAATGTTAAAATTCTGAACTTTGAAATCTTTG
ACTAACAGTAGCAAGGGATGCATCTGCGTGTGCGTTGTGTGTGTGTGTGT
CTGTCTTTTTTATTTTTGCTTTTCCGTCTTCCCTTCCTTTTTTTCTTTTT
TTTCTCTCCTTTTCCCTCCTCTATTTTCTCCCCTCCGCTTTCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_j03.b1 MSMg01no203_j03.b1 CHROMAT_FILE:
MSMg01no203_j03.b1 PHD_FILE: MSMg01no203_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:46 2005
         (234 letters)



>mm_chr9_44592009_44592642
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcaggctttccatcgggacgtggcacctggttcagagaaaggctaagatcactggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggtcaggctttccatcgggacgtggcacctggttcagagaaaggctaagatcactggact 375

                                                                       
Query: 61  aagccctactgagaatgaactcacatgatatatgaagcacagacatgggactaacttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagccctactgagaatgaactcacatgatatatgaagcacagacatgggactaacttcac 315

                                                                       
Query: 121 ggttaggtaggagacaagcacagaatactgtatcacataacacactgagtggaatctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggttaggtaggagacaagcacagaatactgtatcacataacacactgagtggaatctgga 255

                                                                 
Query: 181 ggaactccaatgcaatgagcactattaaggcagtgaatgctcattagagaaact 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggaactccaatgcaatgagcactattaaggcagtgaatgctcattagagaaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)