BAC Information

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BAC

Clone NameMSMg01-208F04
Chromosome9 (Build37)
Map Location 80,062,995 - 80,063,264
singlet/doubletsinglet
Overlap geneMyo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208F04.T7 (MSMg01no208_f04.b1)MSMg01-208F04.TJ (MSMg01no208_f04.g1)
ACCAG391243AG391244
length720720
length of high quality
(start - end)
---282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no208_f04.b1 PHD_FILE: MSMg01no208_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:06 2005CHROMAT_FILE: MSMg01no208_f04.g1 PHD_FILE: MSMg01no208_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAGAAGTTTCATTCGCTACGANNNNNNNNNNNTTCCAANGGGCGCNGGG
AAAAATTTCAAAAAGGGGGGNNNGGAAGGNNGGGGGNCNNNNNNNGGGGT
GTTTCTCATGCAGCNAGANNGGGNNNNNNNNNNNNNGGNAANNNNANGNN
NGGNNGGGGAGGGGNGGGGGGGNAGAGNGGGGACAAAAAGAGAAAAAAAA
AACCCCCCACCCAACAGAAGTTGGTGTTCCCCAACCATTTTCAATATACT
CTCGCCATAAATTTTCTTAAAGGCAGGGAGTGTATGGGGGGGAGGATGTT
TTCCAGACGTCCAAGCAACAGGAAGATTGGCATAAATTTGAGGACGCGAT
ATACAAGAAGGGGGGGCGGGGGGGGAGGAGGGCGTTAAAAAGAGCATCGT
TGAAAAATTTTTTTTGTCGGCGGCGAATAAAAAATGAGGCGCGGCAGGGG
GCGGGTTTTTTTTTTTTTTTCCCCCCCCCCCGCCCCACCGTTTGGAGGGT
AATGTTTTAATTTTAGTTGAAAAATGTTTGCCGCCCCGGACAAAAAAAAA
AAAAAAAAAAAATGCTTATTTTGGGGGGGGTGGGTTTTGCTTCTTTGGTA
TTCTTTACATGTTTTCTTTTTATTTATTTGTCAACCCATCTCGTAGGTAT
ATTATGCTCATTACGCCTAAGGAAAACGGCGGTGTGGGGATTGGAGTGTT
GTGTTCGTAGCTTGTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCTTACTACAAAGTCGTAGCA
TGGTTTAAATTGAGAAAGTGATCTGAATCGTTCAATTCGCCATTCCATTT
TTGGATTGGGGGGAGGGGTTCCTTTGTGGTGTGACTTTGTTGCTTTTCCA
ATTTTTTAAAAAGGATAATTAGCCCTAAATAATCACTAGTGTCCATTGTG
CCATTTGTCTATGTGTATAGAACATTGCCTTCAAATTATTAGTGGTTCCC
AATGAGAGAAAGGCTGTGGGGAAGGGTGGGAGGTGTGACTATCGTCTATT
AGAATGTTTTTTTTTTTTCCACCCCCCTCCCTCCCCTCAGCGATTCTGTA
AGGTAAGCGACTCTACCCCACCATAAAAATAAGGGTAANGTCTGGATCGG
GGATGCAACCTGCTTAGAGCAGTCTGAGTTTCAGGCCTTGGTTTTTATGA
GAATTCGACTCTTTCTAGGCTCCTGACTCCTCTTACTCTCCTGGATGGTG
TGAATAGATCTTTCATGTTTCCTTGACTGCCAATTTGTGTATTTCCGGCT
CGTTTTTTACCGACCAGACGGCTAATGGGTCTGTTGCCCTGATGGTATTA
CTGCTGCCACGATGATCACCGTGGTTTTTCCGGTCATTAGTTTATCGAGT
TATAAAGATCTCTCGTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_f04.g1 MSMg01no208_f04.g1 CHROMAT_FILE:
MSMg01no208_f04.g1 PHD_FILE: MSMg01no208_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:06 2005
         (282 letters)



>mm_chr9_80062781_80063466
          Length = 686

 Score =  427 bits (221), Expect = e-124
 Identities = 257/271 (94%), Gaps = 6/271 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  agtcgtagcatggtttaaattgagaaagtgatctgaatcgttcaattcgccattccattt 74
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agtcgtagcacggtttaaattgagaaagtgatctgaatcgttcaattcgccattccattt 274

                                                                       
Query: 75  ttggattggggggaggggttcctttgtggtgtgactttgttgcttttccaattttttaaa 134
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 275 ttggattggggggaggggttcctttgtggtgtgactttgttgcttttccaattttt-aaa 333

                                                                       
Query: 135 aaggataattagccct----aaa-taatcactagtgtccattgtgccatttgtctatgtg 189
           |||||||||||| |||    ||| | |||||||||||| | |||||||||||||||||||
Sbjct: 334 aaggataattagtcctttttaaagtgatcactagtgtctactgtgccatttgtctatgtg 393

                                                                       
Query: 190 tatagaacattgccttcaaattattagtggttcccaatgagagaaaggctgtggggaagg 249
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct: 394 tatagaacattgccttcaaattattagtggttcccaacgagagagaggctgtggggaggg 453

                                          
Query: 250 gtgggaggtgtgactatcgtctattagaatg 280
           |||||||||||||||||||||||||||||||
Sbjct: 454 gtgggaggtgtgactatcgtctattagaatg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 686
Length adjustment: 9
Effective length of query: 273
Effective length of database: 677
Effective search space:   184821
Effective search space used:   184821
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)