BAC Information

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BAC

Clone NameMSMg01-209C15
Chromosome9 (Build37)
Map Location 70,518,605 - 70,518,798
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik
Downstream geneAdam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209C15.T7 (MSMg01no209_c15.b1)MSMg01-209C15.TJ (MSMg01no209_c15.g1)
ACCAG391793AG391794
length707710
length of high quality
(start - end)
189 (125 - 313)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no209_c15.b1 PHD_FILE: MSMg01no209_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:12 2005CHROMAT_FILE: MSMg01no209_c15.g1 PHD_FILE: MSMg01no209_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAGTGTCCACTACAAGATTCAGAGAGAAGGTTAATTCAGAGTT
AAGGTTGGATTAGATTGGATCCCGTTGGGTGATGAGGAAGGACAGAGTCC
AGGTAAAGGACACTTAGTTACAAAGTAATTGTTTTTCTAGTTTTAACTCT
GTCATAGATTTTCTTTCCTTTCTTTTTGTAGATAAGTGCATACAATGTTT
AAAAGTCGATTTTTTTTTTTTTTTTTTGGAAACATGGTTTCTTTGTATAG
TTCTGGTTGTCCCGTTTTTTTTTCTGTAGACCAGGTTGGCCTGGAACTCA
CATATAACCTCNCTCCCNTGGCCCTGCCCGCTGGGATTAAAGGTGGGTGC
CACCACTGCCCAGCAAGAAAATAAAAAATAATTGATAGGGTATAAGCCAA
AGCAAAGGTCCACAGCTTTAAAATGGCTACTCTAATTGTACAGAACTTCA
TTAAGATGTGTAGGCTTGGGGCTACATCAGCTTAGCTGGATGTTGTTGTG
TTTTAGTTTGCAGGTTACACACACACACACACACACATACACACACACAC
ACACACACACACACCCCTTAAGTTAGAAGCTTACTGGACTCCTTACTCTC
TTTTCTCATTGCTGTGACCAGATACCTGGCAAGAAGCGACTTAAGGAAAG
AAAGATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACATTCAAAATGTTTAAGACAT
CAAAAACATCATGTTAAGCCTAACTTGACAGTCACATAGAACTTAAGTTT
TAAGTCACAATTCTAAATCTACATTCGCATCCATTCCTCTGTTGAGGGGC
ATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAATGCTGCTATGAAC
ATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATAT
GCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTC
TGAGGAACCGTCAGACGGATCTTCCCGCAGTGGTTGTACAAGCCTGCAAT
CCCACCAACAATGGAGGAGCGCTCCTCTTTCTCCACATCCTCGCCAGCAT
CTGCTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGGTGTGAGGTG
GAATCTTAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTG
AACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAAT
TCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCCCTAT
CTGATTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_c15.b1 MSMg01no209_c15.b1 CHROMAT_FILE:
MSMg01no209_c15.b1 PHD_FILE: MSMg01no209_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:12 2005
         (189 letters)



>mm_chr9_70518405_70518998
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 188/194 (96%), Gaps = 5/194 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtgatgaggaaggacagagtccaggtaaaggacacttagttacaaagtaattgttt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtgatgaggaaggacagagtctaggtaaaggacacttagttacaaagtaattgttt 260

                                                                       
Query: 61  ttctagttttaactctgtcatagattttctttcctttctttttgtagataagtgcataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctagttttaactctgtcatagattttctttcctttctttttgtagataagtgcataca 320

                                                                       
Query: 121 atgtttaaaagtcgatttttttttttttttttt-----ggaaacatggtttctttgtata 175
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 321 atgtttaaaagtcgatttttttttttttttttttttttggaaacatggtttctttgtata 380

                         
Query: 176 gttctggttgtccc 189
           ||||||||||||||
Sbjct: 381 gttctggttgtccc 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 594
Length adjustment: 8
Effective length of query: 181
Effective length of database: 586
Effective search space:   106066
Effective search space used:   106066
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)