BAC Information

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BAC

Clone NameMSMg01-209D13
Chromosome9 (Build37)
Map Location 47,339,982 - 47,340,267
singlet/doubletsinglet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209D13.T7 (MSMg01no209_d13.b1)MSMg01-209D13.TJ (MSMg01no209_d13.g1)
ACCAG391830AG391831
length756748
length of high quality
(start - end)
659 (46 - 704)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no209_d13.b1 PHD_FILE: MSMg01no209_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:17 2005CHROMAT_FILE: MSMg01no209_d13.g1 PHD_FILE: MSMg01no209_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATGT
TCAGCATCCTTAATCAGCAGAGAAATCGCAAATCAAAACAACCCTGAGAT
TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGAGGTGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGG
GCATATATCCAGATGATGTTCTAACCGGTAAGGAGGATACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAACAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGGTACAAAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTCCTAGGC
AAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACA
AAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTAGTATACCCGAGATATAAGATACAATTTGCATGACACTGAAGAAGA
ACGAAGACCACAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACATC
ACCCAT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAGAAAAACATATAAACATC
CGGAGACAGAACGTAGCATGGAAGACAAAATTCTCAAGCTGGAATGGAAG
GTGCTGCCAGGATCCCACCCTTAGAACCTCAATTGGTTCTTCAAGCCGAG
TTCCTCCGCAAGCCTATTTTATAATGGGGGTGGGGGTGTCAAATCAACCA
ACCTGGCATCCCCTAAAATCCGAAGCTAGCACTCCCAAGCACCCCCACCC
ACCCCCCAACAGCACGTCTCCTGCGGTGTTTACATAACTATGTGTCCTCT
AGCGTGTAAACAATATACTANTTCCCCCCACCCCCCCGCCCCCGGAACCG
CAGGCTGGCTGGCCCAGCGCCGCATCCTCAAAAAAAAGAAAGCTCCGCAG
GTGGGGGATGAGCTCGCAGCATCCTCCACCACTTGTTGCTCCCAGGTCCT
GCAGCTCGGAGCTGCGAGGGGTTTTGCAGGCACAGAGCCCTAGCGCATCC
CCTCGCGCAGAAGTCCTCTCGCCACCGCCCGGTGCAGCTCGGTCCCGCCG
GTCGCCAGTAGGCAGCGGTAGGCGGTACAGCAGCACGTGGACACCGTGCG
GCGTTCAAGATTGTCTATTTGGCGGGAAGGCGGTCGTATCCGCTTCCGGC
CTCCTCGGTGGGGAAAAACTTCCGGTTCTCCTTTTGTTATCACATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_d13.g1 MSMg01no209_d13.g1 CHROMAT_FILE:
MSMg01no209_d13.g1 PHD_FILE: MSMg01no209_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:17 2005
         (286 letters)



>mm_chr9_47339782_47340467
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaagaaaaacatataaacatccggagacagaacgtagcatggaagacaaaattctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acagaagaaaaacatataaacatccggagacagaacgtagcatggaagacaaaattctca 427

                                                                       
Query: 61  agctggaatggaaggtgctgccaggatcccacccttagaacctcaattggttcttcaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agctggaatggaaggtgctgccaggatcccacccttagaacctcaattggttcttcaagc 367

                                                                       
Query: 121 cgagttcctccgcaagcctattttataatgggggtgggggtgtcaaatcaaccaacctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgagttcctccgcaagcctattttataatgggggtgggggtgtcaaatcaaccaacctgg 307

                                                                       
Query: 181 catcccctaaaatccgaagctagcactcccaagcacccccacccaccccccaacagcacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catcccctaaaatccgaagctagcactcccaagcacccccacccaccccccaacagcacg 247

                                                         
Query: 241 tctcctgcggtgtttacataactatgtgtcctctagcgtgtaaaca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctcctgcggtgtttacataactatgtgtcctctagcgtgtaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)