BAC Information

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BAC

Clone NameMSMg01-209N07
Chromosome9 (Build37)
Map Location 101,200,668 - 101,200,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065
Downstream geneEG382099, Ephb1, 9630041A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209N07.T7 (MSMg01no209_n07.b1)MSMg01-209N07.TJ (MSMg01no209_n07.g1)
ACCAG392204AG392205
length727770
length of high quality
(start - end)
314 (48 - 361)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no209_n07.b1 PHD_FILE: MSMg01no209_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:06 2005CHROMAT_FILE: MSMg01no209_n07.g1 PHD_FILE: MSMg01no209_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAGCCGCGG
AATTCCCGATTTTTCCCATAATTTTAGGAAGAAAGCTTTAATAGATGGTC
TTAGCTATTTTGCTAGAAAGACGTAATAAAGTTAGAATCAAGAATAGAAT
ATGTCTCCTCTATATAATAGTAAGTAAAGGCTGCCTAATAAAAACAATGA
GCTTTCATAATTACATTAAAAAGAGAAATAGACTTGGAATAAATTTGCGT
TCAAGGAAAAAAATTTATGTCCAAGGATACAGTCACAGATGTATACTATG
ATAAGGCAAGGCCATGTAAAAACTGTTGCTTTGAATTTATATTGAACATA
TTAAAATGAAACACGTCTTTGAAATTAATATCAACATCCTTCTGTAACTC
CCCTTTTATGTAACATTTTATCTCTGACGTAATATTCTCAAGAACTGCTC
ATCTAAGAAGGTGTAAAAAGGTCAGAGAAATGAAATAAAATTGTTGGTTG
AATGGTTTGGCTTGTGGAGCTCTGTTCCATCCATCCATCCATCCAAATGT
GTATGTCTGGTCTGTCTGTACATATATGTGTAGGAATATGTGCATGTATG
TTAGCATGCATGAATACTTGTGGAGTGTATAATACTTCACCACTTTGGTG
CTTAGTTCCCTCTTCAATGTTATTGCGCTAACGCCCCTTTGCGACTGTCC
CCGACCTTTGTTCTGTATTTTCCGACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCATGGGGAAGGACTATGCAAGGA
ACAGCAGATAGGAGAGGCTCTGGAGCCAGCTTGGAGTATCAGAGCAAGCT
TTGAAGAATAGACCAGATCTGTCCAAGTCTAGGGGACAAATAGGGGACAC
ACGCACACACATTCTCATTCCCCTAATCCCCACTGAAGTGGATAATAATC
CATATTGCCTACTGTGGGGTGAATGTGAAATTTCCCTACTTGGTCCCCAG
CTGGGAGGTGGTTTGGGGAGGTTGTTTTCCCTCTACCCACTACCCTCCTT
CCTGTATTTTTTTTTTTTTTTCCCCCGCTCCCCCCTCCTTTTTTGTTCCT
TTTCTTTTATTTTCTGTTTGCCCCCACAAAAAAAGAACAAATGTGCTTGG
TTGCCGGCCCCCATCAGATAATTCTGTCTTGCCTCCCCCCCCTCCCCTTA
TTTTCTTTTTCTTTTCCCCCCCCTTTTTTTCTTCCCGCTTTCCCACTTCC
TTTTTTTCCACCCATTTTCTCTTTTCTTTCTTCTTTCCTTTCCCCCTTTT
TATTTTCCCCCTTTTCTCTTTTCCCCTCTTTTCTTCCGCTTTCCCCCCCC
CTTCTTCTCTTTTTTCTTCTTCTTTTCCACTCCTCCCCTTTTCTCCCCCC
TTTTCCCCCCTTCCCTTCCCCTCCCTTTTTCCCCTTTTTTCTTCTTTCGT
TTTCTCTCTCTCTCCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_n07.g1 MSMg01no209_n07.g1 CHROMAT_FILE:
MSMg01no209_n07.g1 PHD_FILE: MSMg01no209_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:06 2005
         (248 letters)



>mm_chr9_101200542_101201189
          Length = 648

 Score =  271 bits (140), Expect = 3e-77
 Identities = 184/210 (87%), Gaps = 18/210 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatggggaaggactatgcaaggaacagcagataggagaggctctggagccagcttgga 60
           |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct: 336 ttcatggggaaggactatgctatgaacagcagataggagaggctctgaagccagcttgga 277

                                                                       
Query: 61  gtatcagagcaagctttgaagaatagaccagatctgtccaagtctaggggacaaataggg 120
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtattagagcaagctttgaagaagagaccagatctgtccaagtctaggggacaaataggg 217

                                                                       
Query: 121 gacacacgcacacaca------------------ttctcattcccctaatccccactgaa 162
           ||||||| ||||||||                  |||||||||||||||||||| |||||
Sbjct: 216 gacacacacacacacacacacacacacacacacattctcattcccctaatccccgctgaa 157

                                         
Query: 163 gtggataataatccatattgcctactgtgg 192
           ||||| ||||||||||||||||||||||||
Sbjct: 156 gtggagaataatccatattgcctactgtgg 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)