Query= MSMg01no210_c09.b1 MSMg01no210_c09.b1 CHROMAT_FILE:
MSMg01no210_c09.b1 PHD_FILE: MSMg01no210_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:34 2005
(313 letters)
>mm_chr9_10777194_10777906
Length = 713
Score = 598 bits (309), Expect = e-175
Identities = 312/313 (99%)
Strand = Plus / Minus
Query: 1 cattgtgtattactggcagagtgaacacacttatccatgtcttgttcttggttttaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cattgtgtattactggcagagtgaacacacttatccatgtcttgttcttggttttaggaa 454
Query: 61 aaaaatgttcagcttttcatgagtaggtgtgatagtattcttgactctcaggtgcagaga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaaaatgttcagcttctcatgagtaggtgtgatagtattcttgactctcaggtgcagaga 394
Query: 121 agcagttcttctatgccagtctgcagagaactttcgtcctgattcacgttaatcttatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agcagttcttctatgccagtctgcagagaactttcgtcctgattcacgttaatcttatgg 334
Query: 181 cttctctgaatctactcacatgagttcatgtccttcatgatctcactgcattacgtcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttctctgaatctactcacatgagttcatgtccttcatgatctcactgcattacgtcata 274
Query: 241 ttcatggctttacatacattccatatgctttactcatgaagtcttatcctggaatatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttcatggctttacatacattccatatgctttactcatgaagtcttatcctggaatatgac 214
Query: 301 attcatttgactt 313
|||||||||||||
Sbjct: 213 attcatttgactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no210_c09.g1 MSMg01no210_c09.g1 CHROMAT_FILE:
MSMg01no210_c09.g1 PHD_FILE: MSMg01no210_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:34 2005
(618 letters)
>mm_chr9_10670142_10671160
Length = 1019
Score = 1127 bits (583), Expect = 0.0
Identities = 610/619 (98%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 1 caggtcccagggaggatgcttgtatgttatgaaaatgataaattaagacagaaa-tatcc 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 caggtcccagggaggatgcttgtatgttatgaaaatgataaattaagacagaaaatatcc 260
Query: 60 ctgctagtgagcttctgatctagatatattaactttttctaacatcaagaaaatatgtct 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctgctagtgagcttctgatctagatatattaactctttctaacatcaagaaaatatgtct 320
Query: 120 tattattaccaccttattttaaacaataatgtttgaataaaatttgttttaataagggct 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattattaccaccttattttaagcaataatgtttgaataaaatttgttttaataagggct 380
Query: 180 ttaaagagaatgtagttttcatgctaagtgtgagacttgacaggcacagagacttgtatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagagaatgtagttttcatgctaagtgtgagacttgacaggcacagagacttgtatt 440
Query: 240 cttataatcattttcagataatgaaacttagtaatagcatcactctaatcatagccagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 441 cttataatcattttcagataatgaaacttagtaatagcatcactctaatcaaaaccagag 500
Query: 300 tcacattaaagctttagctataaccctcggtgattatacagcttgacaaatgcctgccaa 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacattaaagctctagctataaccctcggtgattatacagcttgacaaatgcctgccaa 560
Query: 360 gtaaattatgtatcttgaaattgacatgcaaaagctagagatgccacctcatcagaaagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaattatgtatcttgaaattgacatgcaaaagctagagatgccacctcatcagaaagc 620
Query: 420 tcaagatggaatcaagtgcagggatagcagcctgatctaaagaacttgctggaaagggat 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaagatggaatcaagtgcaggggtagcagcctgatctaaagaacttgctggaaagggat 680
Query: 480 taaatcaatgcattctttccacagatgcacatcatgatgaaatgacactattttcaaacc 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatcactgcattctttccacagatgcacatcatgatgaaatgacactattttcaaacc 740
Query: 540 cacaatagcatttacacattcaagaaaaattcttgcagaaatgttgacagagttgactgt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 cacaatagcatttacacattcaagaaaaattcttgcagaaatgttgacagagttgagtgt 800
Query: 600 ctaattggtaaatatcagt 618
|||||||||||||||||||
Sbjct: 801 ctaattggtaaatatcagt 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
