BAC Information

Click to search

BAC

Clone NameMSMg01-210G23
Chromosome9 (Build37)
Map Location 107,554,417 - 107,554,700
singlet/doubletsinglet
Overlap geneSlc38a3
Upstream geneGrm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2
Downstream geneGnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210G23.T7 (MSMg01no210_g23.b1)MSMg01-210G23.TJ (MSMg01no210_g23.g1)
ACCAG392555AG392556
length752726
length of high quality
(start - end)
34 (415 - 448)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no210_g23.b1 PHD_FILE: MSMg01no210_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:58 2005CHROMAT_FILE: MSMg01no210_g23.g1 PHD_FILE: MSMg01no210_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAGGGGAAANNNAAAANNNTTTCCCCANAACNCCNAAANNNNNAAATC
AAAATTGGGGCGCTAAAGAGGATTCGTTTCGAAAGNGANGGAANNAAGTT
CATACCAAAAAAGGAGANGNNNNNNGNNNAGGAAAAANAGNAGNNNNGGT
TTTTTAACAAAAAAAGAGGGANNGGNGGNNNNANGGNNNAANNNANAGAN
GANNAGAAAGNNGGGANNAAGGAAGAANAAANANAGAAAAAANNNNNNNN
NNNNAGGGNGGNNNNAANAANNNNAGGAAAAGATTAAAAGGNNNNNGAAG
NGGAGNAGANAAGNNGGGNAAGNGGGGANNNAGNGGNNGGGAATTTGTAA
TTTTTTTTGANNAANNNGNNNGNNAAAANGAGGAAAAAAATGTTTTTTTC
TACCACCACCACACAGGAACTTACATAATAATGTAACGCTTTTTACCTTG
CAAAAAAAAAAAAAAGATGCTGATTGGGAAAGAACAGAAAATTCTTTTCC
AAAATTAAGGTGCTGTTCGCCTGGATTGAATGCTACGACTGCTTTTGTTT
AATACATAGTGGTACTATCTCCCAATGGTCAAGAAGTTACATTCCATATT
AACGGGCAGAATTACTAGGTTAAAGGATAGGCAGAGAATTCCAAAAAGAA
AAGATAATATCAAGGACGAAAAAAACTTTTGGTGAATTATATTTTTTATG
TTAAAGGTTATATGGGAATAAAAAGAAAGGATTGAAGGGGGAAGAGGGTG
GG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTAGCACTGCCCCAGCCCATGGG
CACCAAGGCCCCTCCTACCAGGATTTTAGGGGTGGATCTTGCAGGCTCCT
TGTCAGTGGGCATGATTCGGAAGTAGAAGATGGCAGGGAAGATGAAGATG
AGGCACGGAGCAGATGTGGCACCTGCAGAGAACAGAACTTAGCAACAGCT
GCTCTCACTCGCCTACTGGCCAAGGTCTGAAGTGGACTCCCAGTGAGATC
AAGTAGTCTCCGTTGGAGGAGATTCTTTTTTCTGGGGGAGCCCACCAGCC
TTTCCCTCTTTTGNTTCCCCTTNANACGNNANACCGNNGATGGTGTTGGN
GGGNAAGGAAAANATAGGCCAAAAAAGCAGCCAAAAAGANGGGAGGGGAG
GACAGAATAAACCCCTAAGGAAACTGGGTTCTTTGGGCTGGTGAGCTGGC
TCAGCAGTTTCCAGAGGTCCTAAGTTCAATACCCAGCAAGGGCATGGCGT
CTCACAGCCATCTTATAAGGGATCTGATGCCCCTCTTGTGGCATTTAGAT
ATACACATAGTTACAGACTTACATACCTACATACATAACTTACTTCACTC
ATTCCTCTTTTTTTTTTTCTTTACTTACAAGAATTCGGGTTTCCTTAACA
CAGTTTGCTTCATGTTTGTGAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_g23.g1 MSMg01no210_g23.g1 CHROMAT_FILE:
MSMg01no210_g23.g1 PHD_FILE: MSMg01no210_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:58 2005
         (287 letters)



>mm_chr9_107554217_107554903
          Length = 687

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttagcactgccccagcccatgggcaccaaggcccctcctaccaggattttaggggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttagcactgccccagcccatgggcaccaaggcccctcctaccaggattttaggggtgg 260

                                                                       
Query: 61  atcttgcaggctccttgtcagtgggcatgattcggaagtagaagatggcagggaagatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgcaggctccttgtcagtgggcatgattcggaagtagaagatggcagggaagatga 320

                                                                       
Query: 121 agatgaggcacggagcagatgtggcacctgcagagaacagaacttagcaacagctgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgaggcacggagcagatgtggcacctgcagagaacagaacttagcaacagctgctct 380

                                                                       
Query: 181 cactcgcctactggccaaggtctgaagtggactcccagtgagatcaagtagtctccgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactcgcctactggccaaggtctgaagtggactcccagtgagatcaagtagtctccgttg 440

                                                       
Query: 241 gaggagattcttttttctgggggagcccaccagcctttccctct 284
           |||||||  || | ||||||||||||||||||||||||||||||
Sbjct: 441 gaggagagcctatattctgggggagcccaccagcctttccctct 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)