BAC Information

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BAC

Clone NameMSMg01-210H19
Chromosome9 (Build37)
Map Location 81,541,460 - 81,541,653
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666534, LOC100039038, Htr1b
Downstream geneLOC671392, 4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210H19.T7 (MSMg01no210_h19.b1)MSMg01-210H19.TJ (MSMg01no210_h19.g1)
ACCAG392586AG392587
length740729
length of high quality
(start - end)
320 (45 - 364)194 (127 - 320)
definitionCHROMAT_FILE: MSMg01no210_h19.b1 PHD_FILE: MSMg01no210_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:03 2005CHROMAT_FILE: MSMg01no210_h19.g1 PHD_FILE: MSMg01no210_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGTTAGTGGTACAGACCAAATATTCAATAGAATCAAAGCAGAAA
ACTTCCACAAAATAAAGAGTGGCATACCATACTGCACATGCAGATGACCA
AAAACACAGGACAGGACAGGAAACTCCCCAGAAAATATTATATTTAAAAC
ACTAAATATATAGAACAAAAAGAGGATGTTGGAAGCTGTAAGAGCAAAAC
CACAAACCACACACATATAAAGAAAAATCCATTAGAATAAAAGCTTGATT
TTTAAATGGAAACTTTAAGGGCCTGGCAAAAATATAATCAAGTTATAAAA
GACCAGGGATACCTTTTTTAATCTTGACCTCCCCGAACATTGTTACACAT
ATATTTTAGACTTCAAAATGCCTTACAGAACTATGGTGATAAAACAATAT
TGGACTATCACTGAGTGGAAAGAAACAGAAGATTCAGACATGAGTGCTGA
TAAGTACAGCCATCTGGTACTTAACAACAAGGATAATATGCACTAGAAAA
AGACAGCATCTTCAAAATATAGTTCTGGAGAGTGGATGTTCATATAGAAA
AGAATGATTCAAAGACCTCTATTTGAAACCTAAAACATTAAAACTACTAG
AGGAAGAGCAACAGTGATAAAAAGTGTGTGGTATTGGTACAGAGATAGAA
AGGTAGATTAATGGAATAGAATTAAAGACCCAGAAGTGAN
ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAAAAGGTGAA
CTATAGAAGGTTTCCCAAAATTCCTTGTTTCACATGCTGAAAAAATATAA
AACTCCTTCTATCAACTTTATACTTAACATGTAAACTGTGTTCCTATACA
CAAAATAAAGCAATGTTTTCATTAAAAACGTTTAAGTTTTTATTAAAGAA
ATTTACCATCAATGGTTCTTCATTGAGTAGAAAATGGTACGAAACTAATG
TAAGTTAATCACTCTTGCTCAAGCTCACTCAGCAGAATCCTTTCCTTCAG
ACAGCCACTCAGGTCTCTTATATTGATTCAGTTTGATTCCAAAAGAGCCA
TAATGTAATATTTTTTTTTGCCACCACCCTCCTACCATGCAATTGATTTG
CTAGGGCAGTTTCCTGAGCCGCAAATTAAACATATTTTTAGTAAGGAATG
GGGACAAATCTAACATCCAGAAGTATTAGAACAGGTGGAAAAGAAAATGC
AGAGCTTCCTAAGAAGTGGACCATGAGAAGATGAAAGCTGATTAGGAGAG
GGATTGGGAGGGAGGCCGCGCCTNTCTTCTTCCTTTTTCTTCTTTGTCCT
TTCTTTCTTTATTTCTCCGCTTCTCCCCTCTCTCGGNCCTCGTTTTGCTT
GGCCTTTTTTTTTTTTTCTCCTGCCCCTCTTCTTTCCCCCCCCTCTTCCC
TTCCTTTCCCCCTTCCCCCCATTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_h19.g1 MSMg01no210_h19.g1 CHROMAT_FILE:
MSMg01no210_h19.g1 PHD_FILE: MSMg01no210_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:03 2005
         (194 letters)



>mm_chr9_81541260_81541853
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtaaactgtgttcctatacacaaaataaagcaatgttttcattaaaaacgtttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acatgtaaactgtgttcctatacacaaaataaagcaatgttttcattaaaaacgtttaag 335

                                                                       
Query: 61  tttttattaaagaaatttaccatcaatggttcttcattgagtagaaaatggtacgaaact 120
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttttggtaaagaaatttaccatcaatggttcttcattgagtagaaaatggtacgaaact 275

                                                                       
Query: 121 aatgtaagttaatcactcttgctcaagctcactcagcagaatcctttccttcagacagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aatgtaagttaatcactcttgctcaagctcactcagcagaatcctttccttcagacagcc 215

                         
Query: 181 actcaggtctctta 194
           ||||||||||||||
Sbjct: 214 actcaggtctctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)