BAC Information

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BAC

Clone NameMSMg01-211D11
Chromosome9 (Build37)
Map Location 93,003,407 - 93,003,779
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211D11.T7 (MSMg01no211_d11.b1)MSMg01-211D11.TJ (MSMg01no211_d11.g1)
ACCAG393035AG393036
length738740
length of high quality
(start - end)
461 (127 - 587)523 (77 - 599)
definitionCHROMAT_FILE: MSMg01no211_d11.b1 PHD_FILE: MSMg01no211_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:11 2005CHROMAT_FILE: MSMg01no211_d11.g1 PHD_FILE: MSMg01no211_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAATGTT
CAGTATCCTTAATCATCAGAGACCCGCATATCAAAACAACCCTGAGATTC
TACCTCACACCGGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCTTCCATTGTTGTTGGA
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGA
AAATTGGACATAGTCCTACTGGAGGATCCCAAAATACCTCTCCTGTGCAT
ATATCCAGAAGATGTTCTAACCGGTTACAAGGACACATGCTCCACTAATT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAATACAGAAAATTTGGTACATTTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATCCCTAGTCAAATGGATGGA
CCTGGAGAGCATCATTGAGTGAGGTAATCCATTTACAAAAGAACTCACAT
GATATGTCCTCACTGATAAGAGGATATTAGCCCAGGAACTAAGAATACCC
ATAATACAAGATACCATTTCCAAAACACATGAAACACAAGAAAGATAACC
AAAGCGTGGACTCTTTGACACTTCTTAGATCTTGCAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCACTGTGGCTCAAGATCTT
CAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTG
GTGAGCCTTCCAATTCCGGATTGTAATTCATTCCAAATATTGTCAAGTTG
ACAACCAGGAATAGCCACTACAGATGCATAGAGTTGGTCTCTGTGTCTAT
ATCTGTTTCATGTCCCTTTTCTTGGGCATTTTTTCCTTCTGTTTGTTTTG
TCCTATTATGATGTGTTAGCTTTTGTTTTATCTTATTGAATATAATTTTA
TTTTATTTTACTATTATTCCTTACACACCTGTTTGTTTTCCAAGGAGAAA
CACCAGTTAGAGCTAATTGGGAGGGGAGGTAAGGAGGAACTCGAAGAAGT
AGAGGGAGGGAACACCCTAATCAGAAATTTTTCTGTAATAGCAAAGTCAA
TTCTTTAGTCACAGAGTACAATGATGTTAGATGATTTTTTGACAACATAA
TTATATTAAGTTAGGAGCCAAGCAGTTATTTTCAAAGTGCCCGTTCAACT
GCCTGACATCATAAACTTCTGCATATTATAAGGTATATAATTCAACAGCT
TCTACTGCACTCTAAATTGTTTACCTTTCCTCGGCATCTTAGAAAACACT
ATATATATCAGGTCAACAGTATACTAGCATTGCTTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_d11.g1 MSMg01no211_d11.g1 CHROMAT_FILE:
MSMg01no211_d11.g1 PHD_FILE: MSMg01no211_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:11 2005
         (523 letters)



>mm_chr9_93003057_93003979
          Length = 923

 Score =  652 bits (337), Expect = 0.0
 Identities = 364/373 (97%)
 Strand = Plus / Plus

                                                                       
Query: 151 catagagttggtctctgtgtctatatctgtttcatgtcccttttcttgggcattttttcc 210
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 351 catagagttggtctctgtgtctatatctgtttcatgtcccctttcttgggcattttttcc 410

                                                                       
Query: 211 ttctgtttgttttgtcctattatgatgtgttagcttttgttttatcttattgaatataat 270
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttctgtttgttttgtcctattctgatgtgttagcttttgttttatcttattgaatataat 470

                                                                       
Query: 271 tttattttattttactattattccttacacacctgtttgttttccaaggagaaacaccag 330
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 471 tttattttattttactattattccttagacacatgtttgttttccaaggagaaacaccag 530

                                                                       
Query: 331 ttagagctaattgggaggggaggtaaggaggaactcgaagaagtagagggagggaacacc 390
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 531 ttagagctaattgggaggggaggtaaggaggaattcgaagaagtagagggagagaacacc 590

                                                                       
Query: 391 ctaatcagaaatttttctgtaatagcaaagtcaattctttagtcacagagtacaatgatg 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctaatcagaaatttttctgtaatagcaaagtcaattctttagtcacagagtacaatgatg 650

                                                                       
Query: 451 ttagatgattttttgacaacataattatattaagttaggagccaagcagttattttcaaa 510
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 651 ttagatgattttttgacaatataattatattaaattaggagccaagcagttattttcaaa 710

                        
Query: 511 gtgcccgttcaac 523
           |||||| ||||||
Sbjct: 711 gtgcccattcaac 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)