BAC Information

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BAC

Clone NameMSMg01-213L04
Chromosome9 (Build37)
Map Location 20,178,854 - 20,179,031
singlet/doubletsinglet
Overlap geneZfp560
Upstream geneOlfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18
Downstream gene4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213L04.T7 (MSMg01no213_l04.b1)MSMg01-213L04.TJ (MSMg01no213_l04.g1)
ACCAG394605AG394606
length694721
length of high quality
(start - end)
180 (47 - 226)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no213_l04.b1 PHD_FILE: MSMg01no213_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:48 2005CHROMAT_FILE: MSMg01no213_l04.g1 PHD_FILE: MSMg01no213_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGAAATTC
TATTCCGCTAGAGGTATGCCTGTATGATCCTCTATCTTTAAACAACATTT
TCAGAAAGCTCTAAGTGTACTGAAAAAAGAGGCCTTGAATCTGTTACTAA
TTCTCCTCTCTGTTACTAATTCTCTCGCCAGTCAAAGTTTGTCAACTAAT
CTCTAANTTTACCCTGTTCCAATTAACNNTATTGTGNNNTGCTGANNNCC
AAATGCCTCCAACAAAATGAAGTCATGGCCTCATAAAGAAATTCCTAGCA
TTTCTATGCTTATCATGATCTCCATGGCATAATAAGAANNNNAATANANC
CAGATTATTGCTTATTTTTCACTCCCCCCCCCAACATAANGNNCAGTAAG
TTTATGATTTCTTAGAAAGACCCAGATAGAAATGTGCGGAGGGGGGGGGG
GGGGGGGGGGGGGGGGGGCANACACAGAACAGAAGGGNNNTNTTNNNTGT
TGTGGGGGGGCGCCCCNTNNTNTTCCCCNCTTTTNTTNTNNTGGNTAAAT
CTCACTTTTATTTTCTTAATAATCTTTCCCAAACCCCACCCGGAAGGGGG
GGGGTTCCACANTNNNNTTNNNTNTNNTTNNTTCCCCCCNNCCCCTTTNC
CTNNCCCCNTTNTTGGAGGCGGGGGTTGTCTGGGGGGGTAGGGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGAACCAATGTAAAAATCAGAGGCA
GCATGCTTTGGTAATTCCAGAGTTACTGCTGAGTTGAGAGAGGGAAATAT
GAGAATTCCTGCAAATTCCTAGGCCTTCTAGTTCAGCATACACAGATATG
AACAATGAGACCCTGTCTCAAACAAGGTGGCCAGTGAGGAATGACGCACA
GATCATCCTCTGACCTCCATATGCATGTCATACACAGACACAGACACACA
GACACAGACACACAGACACACAGACACACAGACACACAGACACACACACA
CACACACACACTTTTTTTTTCCCCCCCCCCCCACCAAAAACGTAACCTTT
ATTTTTAAAACGTGTGTGCCCCGCCAGAAATTACGTCTATGCACCATGCG
CATGCAGTGCCTGCAGACACCAGACCATGGTGTTAGGTCCCTGGAACTAG
TGCTGGGTCCTCTGGAGGAGCAGCCAGTGCTCTTCACCACTGAGCCATCT
CTCCAGCCCCATAGATTTCACAAGAAAAACAGATGGGCCAGAGTACTGTC
CATAGGGTATAGGCATTTGCCTCTAGGTCTGATGGCTTGATTTCAATCCC
CTGCAAGCTGACTGCTAAAATTACGTTGTGGCATGTGACACATGCCCCCC
AAATAATTTAATTATATAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_l04.b1 MSMg01no213_l04.b1 CHROMAT_FILE:
MSMg01no213_l04.b1 PHD_FILE: MSMg01no213_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:48 2005
         (180 letters)



>mm_chr9_20178654_20179232
          Length = 579

 Score =  310 bits (160), Expect = 5e-89
 Identities = 174/179 (97%), Gaps = 1/179 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctattccgctagaggtatgcctgtatgatcctctatctttaaacaacattttcagaa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctattccgctagaggtatacctgtatgatcctctatctttaaacaacattttcagaa 260

                                                                       
Query: 61  agctctaagtgtactgaaaaaagaggccttgaatctgttactaattctcctctctgttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctctaagtgtactgaaaaaagaggccttgaatctgttactaattctcctctctgttac 320

                                                                      
Query: 121 taattctctcgccagtcaaagtttgtcaactaatctctaantttaccctgttccaatta 179
           ||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 321 taattttctcgccagtcagagtttgtcaacta-tctctaagtttaccctgttccaatta 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 579
Length adjustment: 8
Effective length of query: 172
Effective length of database: 571
Effective search space:    98212
Effective search space used:    98212
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)