BAC Information

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BAC

Clone NameMSMg01-213P20
Chromosome9 (Build37)
Map Location 13,639,623 - 13,639,939
singlet/doubletsinglet
Overlap gene2810485I05Rik
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2, Mtmr2, Cep57
Downstream geneLOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P20.T7 (MSMg01no213_p20.b1)MSMg01-213P20.TJ (MSMg01no213_p20.g1)
ACCAG394798AG394799
length737730
length of high quality
(start - end)
323 (36 - 358)237 (119 - 355)
definitionCHROMAT_FILE: MSMg01no213_p20.b1 PHD_FILE: MSMg01no213_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:10 2005CHROMAT_FILE: MSMg01no213_p20.g1 PHD_FILE: MSMg01no213_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTT
GGATCCAGGAGTTCCTGATAAATCATTACTGTGCTGTTGCTACTTCAGTA
ATTTCTTAAATTGAATAAATATGTATTTCTAACTCACAGGTTATGTAGTA
GTTATTAATACTACAGAAAAATGGAAAGGAAGTCATAGTATTATGAGTGA
AACCATTTGTCTTTCTGAAATCTTCCAATATGATGAGTGTGACTTTTGTG
CACTGACAAAGAGATATCTATAGACTTGGGGGAGGCTGCTTAGGGAGACT
AAGAGGAAGTGAAAGAAGCTACTTCCTAGTCCGACATGGCACAGGATTCT
TAGCAGTTTGTTTCATATCCCGCCCACTCTGCGTTTAGGATAACCATGCC
AATGCAGACTTCTGCACACCATATATAGACAGGGCAGTTGACATAATCAT
TCCTCGATTCTTACATGGTCCTGCTGTGGCCTTGTGCTCATGTACTCCAA
AACTGAGTACAACTTTAAATTGAGTTATTGGAAATCTTAAAGAGAAGAGA
CAATCTACCATTGTCCATGTGTGTAAAAAATTTAAGCTGGCTAGTAATAA
TTTGATTAGAGTTTATCCTATTTAAATGTGATGTGTTCCATATATCAGCT
TATATAGCTACTGTGAGCAGTAGATTTGCAATAGTTTGATTCTTTTGGGA
AAGAATATCTTAAATAAATATGACCAGATGTTACTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCGAAAACTTTCACAGTTATATGGACTGCAACTCAAACTCAATT
TGAGTGTTAGTTTCTTCGCCTGAAAATAGATTGGTCGATACAGGCCATTG
AAGCCACAGTTTCAGTCTGAATCCAGACTCTTGGATTCTTTTTATGACCT
TCAGTTAGAAATTAAGTAAGCCATTTGAAAATGGAGAACAATCTAAACAG
AGGATTCTCAGTAGAGGAATGTCGAGCGCGCGCCCCCAACTCGCCAGCAA
GAACGACGCTGCTACTTTTTCCTTCTGCACACGTTTATTCAGTCCTATTT
CTTCTTNCTTANATCTCCCCCCCCCCCTATCTCCCTTGAACCCTGTTTGT
ATCTCTCCCTCGCCCATATCAAAAAATAATAACAATCCTCTCTCGAATAA
TAATCCTCCCTCTAACCCGGGCCTCTCACTCTTATATACTCTCAGTTCCC
ATCCACGCACAGCAGGCCACGCCACCTCACCAGGCACGCAGCTTCAGCTA
ATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGAATCCT
GGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGTCT
GGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCACCTTTGGGACTGCC
GACACACCCGCTCCCCACAATTCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p20.b1 MSMg01no213_p20.b1 CHROMAT_FILE:
MSMg01no213_p20.b1 PHD_FILE: MSMg01no213_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:10 2005
         (323 letters)



>mm_chr9_13639419_13640141
          Length = 723

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttggatccaggagttcctgataaatcattactgtgctgttgctacttcagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttggatccaggagttcctgataaatcattactgtgctgttgctacttcagt 264

                                                                       
Query: 65  aatttcttaaattgaataaatatgtatttctaactcacaggttatgtagtagttattaat 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatttcttaagttgaataaatatgtatttctaactcacaggttatgtagtagttattaat 324

                                                                       
Query: 125 actacagaaaaatggaaaggaagtcatagtattatgagtgaaaccatttgtctttctgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actacagaaaaatggaaaggaagtcatagtattatgagtgaaaccatttgtctttctgaa 384

                                                                       
Query: 185 atcttccaatatgatgagtgtgacttttgtgcactgacaaagagatatctatagacttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcttccaatatgatgagtgtgacttttgtgcactgacaaagagatatctatagacttgg 444

                                                                       
Query: 245 gggaggctgcttagggagactaagaggaagtgaaagaagctacttcctagtccgacatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggaggctgcttagggagactaagaggaagtgaaagaagctacttcctagtccgacatgg 504

                            
Query: 305 cacaggattcttagcag 321
           |||||||||||||||||
Sbjct: 505 cacaggattcttagcag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)