BAC Information

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BAC

Clone NameMSMg01-214I08
Chromosome9 (Build37)
Map Location 38,207,280 - 38,207,437
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900
Downstream geneOlfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214I08.T7 (MSMg01no214_i08.b1)MSMg01-214I08.TJ (MSMg01no214_i08.g1)
ACCAG395139AG395140
length716734
length of high quality
(start - end)
155 (101 - 255)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no214_i08.b1 PHD_FILE: MSMg01no214_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:52 2005CHROMAT_FILE: MSMg01no214_i08.g1 PHD_FILE: MSMg01no214_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATATAGTCGGAAAGGGGCGGNATTCCATAAAGTTTACATNCAGGAGATC
TAAAATTTTTTCACATAACTTCTTCTTATAGAGATATCGGATGTTTCACA
AAATAGCAAAAAAAAAAGAAACTGATATTGGTATAATATTAACTAAATCA
CAAATATTGTTCAACTTTCAGGAACTGCATGTGTGGCGGAGTGTAGGTTT
GTGTGGGTTTGTTTGCAGGTCTCGATATATTTTTGTGGAAGTCAATCCTA
AAAATCTGCACACCTGACCCCCTNNNNNCAGGATACAATATCATTCGATC
CACATAGGACAACAACCATGTACAAATTATATATTTTTTTTTTCTCCCCA
CCCCGCCCTCATTGGCTGACAACTAATAATTTCATCATCATCCCCGCCCT
GTGAACTAAAATGAGGATGACTGATAGACTTTTTAACCCTTATGATTCCG
CACATTCGCCTCACGGTTTGAGTTTTAGGCCNNCACGCCCTTAAGTGAAC
TTTTTTTTTCTGCCCCATTTCTCTTACCTCCTCTCCCAACCTCTATCTCA
CCTTCCCCTACTCTAGTGCTTACTCGCCGCGTGTCTCCATCTTACATTAA
CTCTATCCTTCTTACCCCCTTTTTTTTTTTTTTCCTACCCGCAATCTATT
TTTTTTTTTTTCAAACCACCCGCATATATATAACCCCCCTTTATTCTCTC
ATTCCTCTTTTTCCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCATTTCTCTTGTTATTTCTA
CCTTTTCATTTCTGATTTTATTAATTCCCATACTGCCTCTTGAACCTTTA
GTTAGTTTTGCTATGGATTTATCTATCTTGCTGATTCTTTCAAAAAAACA
AGCTTTCAAAAAAGCTTTTGGTTTTGCTGGTTCTTTGTATTGTTTTCTTT
GTTGCTATTTGGTTGACTTTGGTCCTGAGTTTGACTGTTTCCTGCCTTGT
ACTCCTCTTGGGTGAATTTGCTTCTTTCTGTTTTAGGACTCTCAGGTGTG
CTGTTAAGTTGTTATTGNAATANCTCTANAGCAAATCCACGTGGGNATCT
TAGCATCTTAGTGCTATGAACCCCCCACAAAAAAAAAAAAAAATTGTATC
CCATAGGTTTGGGTATGATATGTCAACATTTTCATTAAATTCCATTAAGT
CTTTAATTTCTTTCTTTATTTCTTCCATGGCCAAGTTATCACTAAGTAAA
GAGTTTTTCTGTTTCCATATGTGAGTGGGCTTTTCTGTAACTTTTGCTGT
TATTGAACACAGACCTTATTCCCCAGTGATTTGATAGGAAGCATGGTGTA
TATTTCAACCTTCCTGTAACCTGTTGTATTACGAATTTCAGTACAAATAT
GTGGTCCATTTTTGAAAACAGTACCAGTCAAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_i08.b1 MSMg01no214_i08.b1 CHROMAT_FILE:
MSMg01no214_i08.b1 PHD_FILE: MSMg01no214_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:52 2005
         (155 letters)



>mm_chr9_38207073_38207627
          Length = 555

 Score =  267 bits (138), Expect = 2e-76
 Identities = 152/158 (96%), Gaps = 3/158 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatagc---aaaaaaaaaagaaactgatattggtataatattaactaaatcacaaatat 57
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaatagcaaaaaaaaaaaaagaaactgatattggtataatattaactaaatcacaaatat 306

                                                                       
Query: 58  tgttcaactttcaggaactgcatgtgtggcggagtgtaggtttgtgtgggtttgtttgca 117
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 305 tgttcaactttcaggaactgcatgtgtggcggggtgtaggtttgtgtgggtttgtttgca 246

                                                 
Query: 118 ggtctcgatatatttttgtggaagtcaatcctaaaaat 155
           ||||||||||||  ||||||||||||||||||||||||
Sbjct: 245 ggtctcgatatagatttgtggaagtcaatcctaaaaat 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)