BAC Information

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BAC

Clone NameMSMg01-215C19
Chromosome9 (Build37)
Map Location 33,448,151 - 33,576,564
singlet/doubletdoublet
Overlap geneLOC100042343
Upstream geneLOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215C19.T7 (MSMg01no215_c19.b1)MSMg01-215C19.TJ (MSMg01no215_c19.g1)
ACCAG395518AG395519
length709718
length of high quality
(start - end)
315 (39 - 353)313 (385 - 697)
definitionCHROMAT_FILE: MSMg01no215_c19.b1 PHD_FILE: MSMg01no215_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:45 2005CHROMAT_FILE: MSMg01no215_c19.g1 PHD_FILE: MSMg01no215_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,448,151 - 33,448,460)(33,576,255 - 33,576,564)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TGGGAATATTTATTTTGCTCACTGATTTACTATTTTTCCAGTTTGTAAAT
ATATATCTTCTACCTACCTGTTGTATTTATATCTAAATCTGTAAGACATT
TGTACGGAACATTTTTCATACCTTTGAAAACACTGTTTTCAAATTTACAT
AATTTATTCAATATCAATATATGTAAATGCATTTGATCCTATATTGTATA
ACCTTGCTGTATAGATTATTTGTTACAGAGGGTATATTCATTTTCCCACT
TGGGGGCAGATCTCCTTATAGATATCTATGAAAAGAAGGTATTCTTTGAT
TCNATGCTTTCCCCNTCTNACGCCTCTGTATCCAGTTTAGTACAATGCTA
TTTTTCAACGAACTTTACAATAAGATGCTCATGACATATCTGTTGGTTCT
TAGGTCTTAGTGTTAATGGCTGAAAAAAAATACCAGCCAGATTTAGGAGA
CCTCTCTCTAGATAAAATTGTGGAGAACAGTGTCATTTATTTCTTAATTG
CTGGTCAAATAACACCATAGAACTATCTAGCTTGGTGCCTTCTTCTCTGC
GAAGTTAATACTTAGTGCTCAGTTTCTTTAATACTCCTGTTATAGGTACC
AAACTCACTGATCCCCCAATTTCTTCTAGTGTCAGCTTCTAAGGACTTTC
CCTCACCGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAATGTGTGAGTACTCTGAGA
AGCTCAGCATAGTATCTGTCACACCAATCAGTGCTATAAATCCTTTCAAA
GAGCAGATATGGAAAGTCACTATTTTCAAGTACACATGATCTTGAGCAAG
ATTCCTAAAGGAAGACAACACTGTTAAGATGTAGTTTCCTGAGCTTAGCC
ATCAAGAAACAAGTTCTACCTTGCCTGCAGGATCAACACTAAGTTCAGGT
TTCCAGGCCCCAGAACCCAATTCCTACCCCGCTTCTTCAGATGTTCCCTG
TTTGTCTGTTATCTTGTATAGAACGCCCCCACACAGGATGCTGTTATCCT
GTTCTCTAAACTAAGGCACACAAGTCATAAATGTGCTGCTTGTCTTGACT
TAATTGACTACAAGCAGCTTACTCACTCCTTTGGTCCCTTATCACTCTGC
ATTCCTGGTGTCCTGGTGACTGTGTGCTGCTTGCCCATTGATTTGTTCCT
TGATCACTCTAAATTTCAGGTCAGATAAAGTCCAGGAGGGGACCTGACTG
TAAAAGCTGACTCAAGGACCCTGACACCAAGTGACCCAGGTAAGGCCCAT
CCCCCAAAGTTAACTTCCTTGTGTCAAAATATGATTAGTTAATGCAACAG
CCCACCTTGCTCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_c19.b1 MSMg01no215_c19.b1 CHROMAT_FILE:
MSMg01no215_c19.b1 PHD_FILE: MSMg01no215_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:45 2005
         (315 letters)



>mm_chr9_33447947_33448661
          Length = 715

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgggaatatttattttgctcactgatttactatttttccagtttgtaaatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgggaatatttattttgctcactgatttactatttttccagtttgtaaatat 264

                                                                       
Query: 65  atatcttctacctacctgttgtatttatatctaaatctgtaagacatttgtacggaacat 124
           ||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 atatcttctacttatttgttgtatttatatctaaatttgtaagacatttgtacggaacat 324

                                                                       
Query: 125 ttttcatacctttgaaaacactgttttcaaatttacataatttattcaatatcaatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 ttttcatacctttgaaaacactgttttcaaatttacataatttatacaatatcaatatat 384

                                                                       
Query: 185 gtaaatgcatttgatcctatattgtataaccttgctgtatagattatttgttacagaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaaatgcatttgatcctatattgtataaccttgctgtatagattatttgttacagaggg 444

                                                                       
Query: 245 tatattcattttcccacttgggggcagatctccttatagatatctatgaaaagaaggtat 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 tatattcattttcccacttgggggcagatctccttagagatatctatgaaaagaaggtat 504

                     
Query: 305 tctttgattc 314
           ||||||||||
Sbjct: 505 tctttgattc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no215_c19.g1 MSMg01no215_c19.g1 CHROMAT_FILE:
MSMg01no215_c19.g1 PHD_FILE: MSMg01no215_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:45 2005
         (313 letters)



>mm_chr9_33576052_33576764
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   atgctgttatcctgttctctaaactaaggcacacaagtcataaatgtgctgcttgtcttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atgctgttatcctgttctctaaactaaggcacacaagtcataaatgtgctgcttgtcttg 454

                                                                       
Query: 64  acttaattgactacaagcagcttactcactcctttggtcccttatcactctgcattcctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acttaattgactacaagcagcttactcactcctttggtcccttatcactctgcattcctg 394

                                                                       
Query: 124 gtgtcctggtgactgtgtgctgcttgcccattgatttgttccttgatcactctaaatttc 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 393 gtgtcctggtgactgtgtgctgcttgcccattcatttgttccttgatcactctaaatttc 334

                                                                       
Query: 184 aggtcagataaagtccaggaggggacctgactgtaaaagctgactcaaggaccctgacac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggtcagataaagtccaggaggggacctgactgtaaaagctgactcaaggaccctgacac 274

                                                                       
Query: 244 caagtgacccaggtaaggcccatcccccaaagttaacttccttgtgtcaaaatatgatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caagtgacccaggtaaggcccatcccccaaagttaacttccttgtgtcaaaatatgatta 214

                     
Query: 304 gttaatgcaa 313
           ||||||||||
Sbjct: 213 gttaatgcaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)