Query= MSMg01no215_e14.b1 MSMg01no215_e14.b1 CHROMAT_FILE:
MSMg01no215_e14.b1 PHD_FILE: MSMg01no215_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:54 2005
(289 letters)
>mm_chr9_14731877_14732566
Length = 690
Score = 466 bits (241), Expect = e-136
Identities = 277/291 (95%), Gaps = 6/291 (2%)
Strand = Plus / Plus
Query: 1 ggaacagattataggcacatccttgggccttccctggcttctctctatagaccca---gt 57
||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 201 ggaacagattataggcacatccttgggccttccctggcttctctctagagac--aatagt 258
Query: 58 gctgactgtagaatgaagaagaggatggatggatggaggggctcacagggacaagctaat 117
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 gctgactgtagaatgaagaagaggatggatggatggtggggctcacagggacaagctaag 318
Query: 118 cagtcacatcccttcccacagtttcatctttctttacccaaagatgaatcacgaggccta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagtcacatcccttcccacagtttcatctttctttacccaaagatgaatcacgaggccta 378
Query: 178 ttggtcactataccaacttttgggcttctttgccccacatacctaaaatgtggatctttt 237
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 379 ttggtcactatatcaacttttgggcttctttgccccacacacctaaaatgtggatctttt 438
Query: 238 tttttttaaatcaggtattttcttcgtttacatttcaaatgctatcccaaa 288
||||| |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 ttttta-aaattaggtattttcttcatttacatttcaaatgctatcccaaa 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no215_e14.g1 MSMg01no215_e14.g1 CHROMAT_FILE:
MSMg01no215_e14.g1 PHD_FILE: MSMg01no215_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:54 2005
(281 letters)
>mm_chr9_14863343_14864023
Length = 681
Score = 497 bits (257), Expect = e-145
Identities = 275/281 (97%)
Strand = Plus / Minus
Query: 1 tagtggccttgaatcattactaccataagcagtacctgtcctccgctgactgagggtctt 60
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 481 tagtggccttgaatcattactaccataagcagtacctgtcctctgccgactgagggtctt 422
Query: 61 catctgtctgtcttcatcttcttagccattaatggaaagatttttggaaacctccctggc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catctgtctgtcttcatcttcttagccattaatggaaagatttttggaaacctccctggt 362
Query: 121 ctcataatgactgaagactcaatgactaactggtatctgctgggcatcggaagtgaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcataatgactgaagactcaatgactaactggtatctgctgggcatcggaagtgaagtg 302
Query: 181 gacatacacacaatccattaccatgcagagagctttctgttcaaagtaagtatggaacag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 301 gacatacacacaatccattaccatgcagagagctttctgttcaaagtaagtacggaacag 242
Query: 241 tgctcatatggactttgaaggaacattcaatgcatgtctga 281
|||||| |||||||||||||||||||||||||||| |||||
Sbjct: 241 tgctcagatggactttgaaggaacattcaatgcatctctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
