BAC Information

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BAC

Clone NameMSMg01-217M09
Chromosome9 (Build37)
Map Location 110,724,623 - 110,724,986
singlet/doubletsinglet
Overlap genenone
Upstream geneSpink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik
Downstream geneTessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217M09.T7 (MSMg01no217_m09.b1)MSMg01-217M09.TJ (MSMg01no217_m09.g1)
ACCAG397184AG397185
length1,2901,282
length of high quality
(start - end)
424 (28 - 451)381 (69 - 449)
definitionCHROMAT_FILE: MSMg01no217_m09.b1 PHD_FILE: MSMg01no217_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:31 2005CHROMAT_FILE: MSMg01no217_m09.g1 PHD_FILE: MSMg01no217_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGCACTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
TTGAGTCCTTTGTTTCAATGTTCATATAGCTATGTATGTATGTAATATGT
ATGTAACATGTTTGTATGTATGTATCTTTTGGGGGCAAGGTCTTACTGTA
TAGTCCTGCAGCTCAATATATAGACCAGTCTGGCTTTTAGCTCACAAGAG
ATCACCCTGCCTCTATCTCCCAAATTCTGGAATTAAAAGTTTATATAACC
ACACTGGGCTAAATAGGCTTTTTACCCCTTTGAGATAAAATCTCATGCAA
TCCAGGTTTCCTCCTCTGAGTCCTAAAGATAACCTTGAATTTCTAATCCT
CCTGCCTCTGCCTCCTGGGTTCTGGGACCATAGGTGTGGATTAATATTCT
CTGTTTATGCAGGTCCATGGTTCAAACTCATGGCCTTGCTTTGTTGCTGT
TTTTTTTCCCCCCCCCCAGCTCCACTTGCGGCCCCTGTAAAAAAGGATTT
AATGGCATGTGTGTGTTTCCCTGTAGCCCGAGGTCAGCACTGATTAGGCT
AGCCTGGCTGGCCAGTTAGCTCCAGTGATCTGACCCTGTGCCTAGCACAG
ATCCTGCCTGGTGCAGCTGTCACAGCACTCACCACTAGGGGCAGGAGGAT
CAGAGTCTGCAGTCAGTCATCCTCAGCCTCACGCTGAGTTGAAGCCAGCC
TGGGCTACATGTAGTTAATTTACTATTTCCGTGTATCAGCTTGGACTTCT
GAAGGATACCTCTTCCCAGCAATCAGCTGGTCCTGTTTCATGCTCCCAAT
TCATTTTTAATTCAAGTGTGCGTGAAAGTACCGCAGTGTATACTCCACGG
CCCCTTCATGTATTGTGTCTCAAACCTCTAACTTTCAAGCCCCCGGTAAC
TGTATACCCCTGTTCCATACTCAGTGGCCTTCTCACTCAGTGATTTGTCC
CCCCCCTAACTCTTCCCTGGTCTAACTCCAAAATTCCCCTATTTTATCCC
TATTTCTAACCAACTCTATTCTATATATCCTCTTGTTATTCAATATCCCT
CCTGGAAAACACTCTCGTGTTCTTTTCTTTTAATTAAATTTTAAATTCTT
GGCCCCCCGGATAATTCTATAGTTTTTGCTTCCTGTAACACTCTCCCCTC
ATTTTATTTAAATTCCTTTTTTATACTATTCTTGTATATTTACTTTCTTT
TATTTTATAATTATATACTTTGTTTCCTTTTTATTTCACAATCAGTATTT
TTATTTATTTTATCCTTTCTCTACTCGTAATTCTTCATTA
TTTTGTGCATGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATACCGGGCCGGAGAGATGGCCTCAGTGATT
AAATGCACTTGCTGGTCTGGTTGCCCTGAACCCACGCTGAGTTCCCAACA
CTTGACGTGGTAGCTCACAACCATCTGTAGCTCTGATTCTAGTGGATCAA
ATGTCCTCTTAGGACTTCTACAGGCAACAGGCATACACAGGGTGCCCTGA
CATACATGCAGACAAAGCATTCGTACCCATAAAATTAATGCTGTAATGGC
TGAACATGTATACACCTATATCACAACTTACTGAACATATTAAATGAGCT
CAGTTTATTATCTGCTCACCACATGTAAAATAACAAAGCTGCCGAAATGT
TTTCTTTTACTCCATATGAAGATGTTAGGCTATCAGTAATACCAAAGATT
TTTTTTTTCCCCCCCCCCCCCAATAAGNATTAAATAAAAAAAAAAAGAGA
GTAGTTGGNCCCATCCCACAAAGCCTTATGCAACGGTAGTTTTATTAATG
AGCTCTGTCTTTATCTTCTCACTGTCCATGTGATAAAGTTGACATGCAAA
CCCAAGTGAAGCAAACAAACCAGTGGTAATGGATGCACAGCTACAGTGCT
TGTGATGCCATCGGGGCATGCCACTCAGTCAGGAAGCTCTCCATGTACCC
CTGCATCACACAGTTCCCTACTGCTCCGATGAAATGTTAATTATAATTGC
GCCGTTGCTCCTATGCCTTTCTTTGTGGTTTTAAGCTCTCAAACACGGTT
CCCTGTGTGCTACCCTCTATTCTAAGTTTGCATTTGGTATATTCTTAGAA
ACCTGAACTGCCCATTACCCAGTCCTTTGGATGCCCCCTTGTGAGAGACT
CTTGAATTTGACCTGTGGCCGCCTGGAAGCTTGTATTTTGGAAATTTTGC
TCCAGGTTGGTTGTTTTGCCTCCTAAATATTCCGACTGGATTTACTTCCG
TTTTTCTTGTCACTAATAAATTTGTTGCCTTGGTCTTTCTCTGAAAAAAT
ATTTTTTTTATGGCCCCTCTTTTGTTTAAAACAGGGGTTGTTTTCTCTTC
CAACTCCGGGATATTTTTCGATTTTATATGTCGCTTCTATATTTCTAGTG
TTTCTTTATTATCTCCTTAAAATATTTTCTTATCTTCTTCTACATACAAA
TTAATTCATTATCTTCTTTTTTCAATACCTTCTTCTCTTTTAGTGGTCTT
GTNTTGATCTACTCCTCTTTTTACATTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_m09.g1 MSMg01no217_m09.g1 CHROMAT_FILE:
MSMg01no217_m09.g1 PHD_FILE: MSMg01no217_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:32 2005
         (381 letters)



>mm_chr9_110724206_110724986
          Length = 781

 Score =  642 bits (332), Expect = 0.0
 Identities = 356/364 (97%)
 Strand = Plus / Minus

                                                                       
Query: 17  gatggcctcagtgattaaatgcacttgctggtctggttgccctgaacccacgctgagttc 76
           ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 781 gatgggctcagtgattaaatgcacttgctggtctggttgttctgaacccacgctgagttc 722

                                                                       
Query: 77  ccaacacttgacgtggtagctcacaaccatctgtagctctgattctagtggatcaaatgt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaacacttgacgtggtagctcacaaccatctgtagctctgattctagtggatcaaatgt 662

                                                                       
Query: 137 cctcttaggacttctacaggcaacaggcatacacagggtgccctgacatacatgcagaca 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cctcttaggacttctacaggcaacaggcatacacagggtgccctgacatacatgcagaca 602

                                                                       
Query: 197 aagcattcgtacccataaaattaatgctgtaatggctgaacatgtatacacctatatcac 256
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 601 aagcattcgtacccataaaattaatgctgtaatggctgcacatgtatacacctatatcac 542

                                                                       
Query: 257 aacttactgaacatattaaatgagctcagtttattatctgctcaccacatgtaaaataac 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacttactgaacatattaaatgagctcagtttattatctgctcaccacatgtaaaataac 482

                                                                       
Query: 317 aaagctgccgaaatgttttcttttactccatatgaagatgttaggctatcagtaatacca 376
           |||||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaagctgccgaaatgcattcaattactccatatgaagatgttaggctatcagtaatacca 422

               
Query: 377 aaga 380
           ||||
Sbjct: 421 aaga 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)