BAC Information

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BAC

Clone NameMSMg01-218D15
Chromosome9 (Build37)
Map Location 103,333,467 - 103,333,700
singlet/doubletsinglet
Overlap geneBfsp2
Upstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3
Downstream geneTmem108, 4932413F04Rik, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218D15.T7 (MSMg01no218_d15.b1)MSMg01-218D15.TJ (MSMg01no218_d15.g1)
ACCAG397472AG397473
length756706
length of high quality
(start - end)
230 (47 - 276)236 (127 - 362)
definitionCHROMAT_FILE: MSMg01no218_d15.b1 PHD_FILE: MSMg01no218_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:10 2005CHROMAT_FILE: MSMg01no218_d15.g1 PHD_FILE: MSMg01no218_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCATAGTGACACACAATTGGCTTATTCAAACATCAGCAGAAAA
TTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTTT
AGATAGCCCTGTTCTGTCCTCACATTCCTCTTTATCTTTAAAGTTAAGCT
GTTCCCAGGAATGTTTTAACTCCGGGTCATACCCAGGTTTGTTTTTCTTT
TTTCTCAGCCCCAGGCAGCCTCTAGGTTCACAAACAACCAGCAATTTCTG
AGTACTTTATATGACTTACATTTTTTGAAATTTCATCTTTCTTTCATAAG
AAACACAATGTTTTAAGTGNGTCCCNANGACAAAAACCCAGCCTGTCAGT
GTCAGGTGCTTTTTCAGTTGCCCCCCCCTTTTAAAAAATAATCGTGGTTC
TGGGCGCCAATTTTATTTCTCCCTTTGTCCCTTGATTCGTCTTTAAAGTT
AGCTCTTCTTTTTTATCGTTTCCCCTTCTTTTACCTCTGCTCCCTCTTCT
GCTTTCCTTTATCCACCTTTTTTTATCCACTCTCACCTCATTTTCTTCCA
TTTTACGTCTACGCTTTTCCTTTTTTATTTATGTCTTTTTTTTTTTACTC
CTCTCTCCCTCTGTCTCTTACTTTTTTTTCTCTCTCTTTTCCTTTTACTT
CTATTCTTTACTTCTTACCTTTTCTTTTCCTTTATCCCATTTCTTTTCTT
TCTTCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGACTTCTATAGAGGAACTGATGTCA
CCTTAAGAATCACAAGGTTCACCATGTGAGGGAGTGACAAGGGGGAGACT
AGCTCCACTATAGGAGTCCGTATGTTTATTTTTTGGTGGGTATAGAGAAG
GGCAGAGTTGGGGTAGGGTCTAGAACGTCTCCACCCACCAGGAAGTCTAC
CTCTGTCTTTACTCTTCTCCTAGACAGGGAAGTCCTGTGAATTTGGGACG
AGTGCTTAGACTTGTGATCTTGTTCCCCGGGCTCCTGTCCTCACTGGTCA
TATGAACTTTCAATCCCTTCCCCCCCCTCCGCCTAGTAAGGATCTATTTT
AGTTGTTCTATGTTCCTCCCCCCAAAAAAAAATACAACGTCGGGGGGGGG
TGTGCTCTATCGTCCTGTGATTCAGGAAGAGGTCAGCAGGGACTGCTCTT
CCCTATCCCTCGAGGTGTCTGCTGGGCTTGGTATACCCACCGTGGCTTCT
TCAGTTCACCTGTGACATTCCTCATTCGTGATTCTCTGTCCTGTTCCTTG
ATACCTCTTCCTATCGGTAGCTAGTTTGTATATCCTTGAACTATGTTGCT
CTTATAGTTTCCTCTCCACTCCTGTATAGTTTACCTTGCTTCCCTTTAAC
ACTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_d15.g1 MSMg01no218_d15.g1 CHROMAT_FILE:
MSMg01no218_d15.g1 PHD_FILE: MSMg01no218_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:11 2005
         (236 letters)



>mm_chr9_103333167_103333802
          Length = 636

 Score =  398 bits (206), Expect = e-115
 Identities = 225/236 (95%), Gaps = 9/236 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagggagtgacaagggggagactagctccactataggagtccgtatgtttattttttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgagggagtgacaagggggagactagctccactataggagtccgtatgtttattttttgg 475

                                                                       
Query: 61  tgggtatagagaagggcagagttggggtagggtctag-------aacgtctccacccacc 113
           |||||||||||||||||||||||||||||||||||||       |  |||||||||||||
Sbjct: 474 tgggtatagagaagggcagagttggggtagggtctagttggggta--gtctccacccacc 417

                                                                       
Query: 114 aggaagtctacctctgtctttactcttctcctagacagggaagtcctgtgaatttgggac 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aggaagtctacctctgtctttactcttctcctagacagggaagtcctgtgaatttgggac 357

                                                                   
Query: 174 gagtgcttagacttgtgatcttgttccccgggctcctgtcctcactggtcatatga 229
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 356 gagtgcttagacttgtgatcttgaaccccgggctcctgtcctcactggtcatatga 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)