BAC Information

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BAC

Clone NameMSMg01-218F24
Chromosome9 (Build37)
Map Location 81,765,272 - 81,765,947
singlet/doubletsinglet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F24.T7 (MSMg01no218_f24.b1)MSMg01-218F24.TJ (MSMg01no218_f24.g1)
ACCAG397567AG397568
length713744
length of high quality
(start - end)
319 (45 - 363)676 (69 - 744)
definitionCHROMAT_FILE: MSMg01no218_f24.b1 PHD_FILE: MSMg01no218_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:22 2005CHROMAT_FILE: MSMg01no218_f24.g1 PHD_FILE: MSMg01no218_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCATATGGCAGGTTTTGTTGTGCAAATCTTGCTCTTTTTTTTTT
CTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATA
CCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCCACTCC
CCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTATGT
GTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGAT
ACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATG
TTGTTCCACCTATATTGTTGTTTCCNNNTCTAGNCCCTTGGGTACTTTCT
CTAGCTCCTCCATTGGGAGCCCCCCCATACAACAAATAACTGACTGTGGG
CATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGC
TACATCTGGGTCCTATGTCTCAAGAAAAAAAATGAAGTGAAGCACATACA
TACACACATACTCACAGCAGCAGCAGCAACAACAACAACAACAACAACAA
ACCCCAGCAAGCCACTACATTTTTTGCCAACAACCCAAATGATCTTAAGA
TCAGAATTCCTTGCACTACCTCAAGCTTTATGTTTATGTCAAATGTAGCT
GAATTGAATTATA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATTTTTAATAGGCCTCTCAGATATTTCTCAG
CTCTTCCAATTCTGTCTTCTCATTTATTCAGTGAATTCATTCCTTATTTC
ATTTCTGATTAGATTGCTTTCACCTTGGCAGAACTCTGGACAATAAACCC
TCTTATATTTAACATATGCTTTAGTTTAGTTGTAATGAATAGAATAATAG
AACAGCTTATTAGAAACTGATTTTGATGGTTGGTGAGAGAGATGTAACAT
TCTTAATCTTTAGTATGGTAGAGCATGTATTTAAAAGGCCTCTTCTTTTC
CTGTGTCATCCTGCTTACAGGAATACCTGTCATTGCAAGATGAAAAACCC
AGCCAAACCTTACTTCACACCCCACAGTGGTGACTGTTTAATCCTTCTCA
GAACAATGGCAGGATAAACGTACTGTTCCTTCTTCACTAATAGCATCCCT
GACCAGAGGCTTATCGTCCATTTTCTGTTTGTAATTTGTTTATTTTCTTA
TTCTACTAATTCTATTGTCTCCTCTTCACATTAAAAGCCCAGAGGGAAGG
AACGTCTGTGTCTCTATAGTGTCTGGTACAACCAATTACTGATTCTGAAT
GCTTACTGACAATATAAGACTGTTTAATATTCTGCTTTTCTATAACAGTG
CATAGAATATTTAACATAGTTATGGAAACATTACTGCTTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f24.g1 MSMg01no218_f24.g1 CHROMAT_FILE:
MSMg01no218_f24.g1 PHD_FILE: MSMg01no218_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:22 2005
         (676 letters)



>mm_chr9_81765072_81766147
          Length = 1076

 Score = 1261 bits (652), Expect = 0.0
 Identities = 670/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttttaataggcctctcagatatttctcagctcttccaattctgtcttctcatttatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 tatttttaataggcctctcagatatttctcagctcttccaattctgccttcttatttatt 260

                                                                       
Query: 61  cagtgaattcattccttatttcatttctgattagattgctttcaccttggcagaactctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgaattcattccttatttcatttctgattagattgctttcaccttggcagaactctg 320

                                                                       
Query: 121 gacaataaaccctcttatatttaacatatgctttagtttagttgtaatgaatagaataat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gacaataaaccctcttatatttaacacatgctttagtttagttgtaatgaatagaataat 380

                                                                       
Query: 181 agaacagcttattagaaactgattttgatggttggtgagagagatgtaacattcttaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agaacagcttattagaaactgattttgatggttggtgagagagatgtaacattcttaatt 440

                                                                       
Query: 241 tttagtatggtagagcatgtatttaaaaggcctcttcttttcctgtgtcatcctgcttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagtatggtagagcatgtatttaaaaggcctcttcttttcctgtgtcatcctgcttac 500

                                                                       
Query: 301 aggaatacctgtcattgcaagatgaaaaacccagccaaaccttacttcacaccccacagt 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 aggaatacctgtcattgcaagatgaaaaacccaaccaaaccttacttcacaccccacagt 560

                                                                       
Query: 361 ggtgactgtttaatccttctcagaacaatggcaggataaacgtactgttccttcttcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgactgtttaatccttctcagaacaatggcaggataaacgtactgttccttcttcact 620

                                                                       
Query: 421 aatagcatccctgaccagaggcttatcgtccattttctgtttgtaatttgtttattttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatagcatccctgaccagaggcttatcgtccattttctgtttgtaatttgtttattttct 680

                                                                       
Query: 481 tattctactaattctattgtctcctcttcacattaaaagcccagagggaaggaacgtctg 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 tattctactaattctattgtctcctcttcagattaaaagcccagagggaaggaacgtctg 740

                                                                       
Query: 541 tgtctctatagtgtctggtacaaccaattactgattctgaatgcttactgacaatataag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtctctatagtgtctggtacaaccaattactgattctgaatgcttactgacaatataag 800

                                                                       
Query: 601 actgtttaatattctgcttttctataacagtgcatagaatatttaacatagttatggaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actgtttaatattctgcttttctataacagtgcatagaatatttaacatagttatggaaa 860

                           
Query: 661 cattactgcttcccag 676
           ||||||||||||||||
Sbjct: 861 cattactgcttcccag 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)