BAC Information

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BAC

Clone NameMSMg01-218P14
Chromosome9 (Build37)
Map Location 28,384,649 - 28,384,907
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218P14.T7 (MSMg01no218_p14.b1)MSMg01-218P14.TJ (MSMg01no218_p14.g1)
ACCAG397941AG397942
length753728
length of high quality
(start - end)
270 (44 - 313)261 (433 - 693)
definitionCHROMAT_FILE: MSMg01no218_p14.b1 PHD_FILE: MSMg01no218_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:08 2005CHROMAT_FILE: MSMg01no218_p14.g1 PHD_FILE: MSMg01no218_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGAGAGTCAACTAACCTGGAGCCTTAGGGGTCTCAGAGACTGAACC
ATCAGTCAAAGAACATACATGGGCTGGATCTAGGCCTCTCCATACACATG
TAGCAGATGTGCAGCTTGTTCTTCATGTGGGTCCCAAACAACTGGAGCAG
GGGGTAGGGGGTTTTCCCAAAAGCTGTTTCCTGTCTGTGGGGTATGTTCT
TCTATCTGGGTTGCCTTGTCTGGCCTCAGTAGGAGGGGATGTGCCTAGCC
CTGCAGAGGCTTGATGTTTTTTTTTTAGAAGAATACCCAGGGAAGCTCCA
AACTGTTTTGAGTAGATCTCAAAAGCAAAGACCCCAGGTTTGTATTATGG
GTTTGTTTTTGTTGTTTTCCCCCCAAACNAAATAAAAAAATGGGGGGGGG
GGGGGCTCCTTCTCCTTTTCTTCTTCTCTCCTGCTATGTCACTCGAAATC
TCCCTCTTTTCTCATTATCTAACCCTTTATCCTTTCCGTCTTGTACTTTT
CACTTCTTATTCTAGACCTACGGTCGTCCGTGTCTTTTTTTTTTATTTTT
CTATTTTTCTCCCTCGTTATATCAGGTTATCGACTCTCGTAATTTATTCC
TACGCTATGACAATATTTATACTTGCTATTTTCTTGGTATATCGTTTTCG
TTTCGAGTCGACTCTATGAATTCGACCCTGCCATTTACTCATACAATTTT
TGT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGAGAGTTAGATGCAGGCCTGTG
CAGGGAGATATTATCTTTTAGGCCATAGTGATCACATATGCTGCTTAGAG
GAGCAAATGATGTTTATCTAGAAAGAAAAACAAGCCACAGAAGAAGGAAG
AGAGCATACCACACTGCTTGAATGCCTCAGTTTCTAGGTGGCAAAGCTTT
GCCATCATGTCACTAGTTGTGTTAACACAGCACTACCTTGTTAACTAATG
GGTCTCTCTGTCATTCCCCTTTTCTTGGCTGCTTAGTTAGGCATCCTTTG
ACTCTGATNCAGTCNNTTCCTTNTCCGNNNCGCGGATTTCTCATCATACC
ATAGAGATAATGTATTTACGCTCAAGAACAAAAAATTTCAATGCTAATAA
ATAAGCCTGTGAAAATGAAGCCCACCACCTTCCAGTCCCGAAAGACTTGG
GCTTTAGCTGATTATAATGTGCTGAGTTTTGTTTTCCTAAATCCACCGTT
CCCTCCATGTCAGTTTTTGATATATTTCTGTAAGAAAGTGCTTCTCTTTT
TTCAATACTTGTTTAGATATTTTTCTTGTATGTCAGATATTTGTTTATGC
ATAAAATATAACATTTTATTTTATGCAATATATTATAAATATTTTAAATT
GCTTGAACTCTATTTGTCTTAGATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_p14.g1 MSMg01no218_p14.g1 CHROMAT_FILE:
MSMg01no218_p14.g1 PHD_FILE: MSMg01no218_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:08 2005
         (261 letters)



>mm_chr9_28384490_28385150
          Length = 661

 Score =  493 bits (255), Expect = e-144
 Identities = 258/259 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   atttcaatgctaataaataagcctgtgaaaatgaagcccaccaccttccagtcccgaaag 62
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 418 atttcaatgctaataaataagcctgtgaaaatgaagtccaccaccttccagtcccgaaag 359

                                                                       
Query: 63  acttgggctttagctgattataatgtgctgagttttgttttcctaaatccaccgttccct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acttgggctttagctgattataatgtgctgagttttgttttcctaaatccaccgttccct 299

                                                                       
Query: 123 ccatgtcagtttttgatatatttctgtaagaaagtgcttctcttttttcaatacttgttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccatgtcagtttttgatatatttctgtaagaaagtgcttctcttttttcaatacttgttt 239

                                                                       
Query: 183 agatatttttcttgtatgtcagatatttgtttatgcataaaatataacattttattttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agatatttttcttgtatgtcagatatttgtttatgcataaaatataacattttattttat 179

                              
Query: 243 gcaatatattataaatatt 261
           |||||||||||||||||||
Sbjct: 178 gcaatatattataaatatt 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)