Query= MSMg01no232_o03.b1 MSMg01no232_o03.b1 CHROMAT_FILE:
MSMg01no232_o03.b1 PHD_FILE: MSMg01no232_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:28 2005
(688 letters)
>mm_chr9_110368019_110369106
Length = 1088
Score = 1236 bits (639), Expect = 0.0
Identities = 674/697 (96%), Gaps = 20/697 (2%)
Strand = Plus / Plus
Query: 4 ggaattctgcttaaatgtgaaagaaagaaagaaagaaagaaagaaaggaagaaagaaaga 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 200 ggaattctgcttaaatgtgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 259
Query: 64 ------------tagatatgaatatatcatatatgaatatgaatataaaaagtcataggg 111
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggaagaaagatagatatgaatatatcatatatgaatatgaatataaaaagtcataggg 319
Query: 112 agaaatagtaaataaagtctctgaaggaaggagagagctagagatttaaaaaaggagcca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaaatagtaaataaagtctctgaaggaaggagagagctagagatttaaaaaaggagcca 379
Query: 172 ggtggtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcagatttct 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtggtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcagatttct 439
Query: 232 gagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagaga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagaga 499
Query: 292 taccttgtcttgaaaaaaaccaaagaaatataataataataataataataataataataa 351
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taccttgtcttgaaaaaa-ccaaagaaatataataataataataataataataataataa 558
Query: 352 taaataaaataaaaaaggaaaatattttctatgttaaaaatggagaaaaacgcaatgacg 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 -------aataaaaaaggaaaatattttctatgttaaaaatggagaaaaacgcaatgacg 611
Query: 412 gaaggcatctggatcctgtataactttgtttcacttatcagcttacaaataattatattt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaaggcatctggatcctgtataactttgtttcacttatcagcttacaaataattatattt 671
Query: 472 ttaataatgatcaaatgttagatatcctaattttttttgatatcctaatttttaagagag 531
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcaataatgatcaaatgttagatatcctaattttttttgatatcctaatttttaagagag 731
Query: 532 actataacaaagcaaacttagataataaagaactgaaaaaaaatccctgctaaattacag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 732 actataacaaagcaaacttagataataaagaactgaaaaaaaatccctgctaaattatag 791
Query: 592 acaatacaacaaaatttaggcaatcctttgaatcatgaaatttcagaggaatccaaccta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 acaatacaacaaaatttaggcaatcctttgaatcatgaaatttcagaggaatccaaccta 851
Query: 652 cagccaacagcaccaccttgtgccacgactgcaaatg 688
|||||||||||||||||||||||||||||||||||||
Sbjct: 852 cagccaacagcaccaccttgtgccacgactgcaaatg 888
Score = 184 bits (95), Expect = 2e-50
Identities = 119/127 (93%)
Strand = Plus / Plus
Query: 177 tggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcagatttctgagtt 236
|||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 959 tggtggcgcacgccattaatcccagcatttgggaggcagaggcaggcagatttctgagtt 1018
Query: 237 cgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagatacct 296
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 1019 caaggccagcatggtctacagagtgagttccaggacagccagggctacacagagaaaccc 1078
Query: 297 tgtcttg 303
|||||||
Sbjct: 1079 tgtcttg 1085
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 2
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_o03.g1 MSMg01no232_o03.g1 CHROMAT_FILE:
MSMg01no232_o03.g1 PHD_FILE: MSMg01no232_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:29 2005
(654 letters)
>mm_chr9_110516730_110517782
Length = 1053
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 1 ttgacaggtaacacaatactttgggtcaagagatacaagctaatccatcctcagacaaga 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 853 ttgacaggtaacacaatactttgggtcaagagatacaagctaacccatcttcagacaaga 794
Query: 61 cagatgcacatacttaggcaagacacaaagagctcacaccaagccagaggacatcttcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 cagatgcacatacttaggcaagacacaaagagctcacaccaagccagaggacatcttcca 734
Query: 121 agccttacctcttttctgaatacttctttgcttttctttgccagctcactggaggtgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agccttacctcttttctgaatacttctttgcttttctttgccagctcactggaggtgtct 674
Query: 181 gcttctgctgtcttgggcttttttgatgtctagaaagagaaacacaataatgctgacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttctgctgtcttgggcttttttgatgtctagaaagagaaacacaataatgctgacatg 614
Query: 241 aggtgtctcctgccctgctgtcccagcacgcacatgtctttctcctagtgggctaacccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aggtgtctcctgccctgctgtcccagcacgcacatgtctttctcctagtgggctaacccg 554
Query: 301 acaaaaggacaaggtttggagactcctttactaagactttcaaaatcgaccacctgaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acaaaaggacaaggtttggagactcctttactaagactttcaaaatcgaccacctgaccc 494
Query: 361 tggtctccttagaagcctaattccaatcctccaccataagtccgagctccatctctcatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tggtctccttagaagcctaattccaatcctccaccataagtccgagctccatctctcatg 434
Query: 421 tagccatacacttcaaggtgcttcataggtgctcgctgtgcagggtgtgcactatccaca 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tagccatacacttcgaggtgcttcataggtgctcgctgtgcagggtgtgcactatccaca 374
Query: 481 ctcaaaagtgacttagtctgtctagtatgacatgttagcattccagagcaaagttaaggg 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctc-aaagtgacttagtctgtctagtatgacatgttagcattccagagcaaagttaaggg 315
Query: 541 ctccattctgaagtccttggtactcctctacctttccttccaacgtggagctgcctagac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctccattctgaagtccttggtactcctctacctttccttccaacgtggagctgcctagac 255
Query: 601 tacatacgacagtctcaatgcaaggaacaagagatcctgtcttaaaagagctcc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacatacgacagtctcaatgcaaggaacaagagatcctgtcttaaaagagctcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
