Query= MSMg01no233_d23.b1 MSMg01no233_d23.b1 CHROMAT_FILE:
MSMg01no233_d23.b1 PHD_FILE: MSMg01no233_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:55 2005
(315 letters)
>mm_chr9_37091554_37092268
Length = 715
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%), Gaps = 1/312 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggtcagactatactacatagt-gagaccctatgctgaacaacaagaaataac 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 gaattccaggtcagactatactacatagttgagaccctatgctgaacaacaagaaataac 263
Query: 64 atgaaaaagactgaaataaatcttccatgggtgaaagcaacaatttctgagtaaaaaaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgaaaaagactgaaataaatcttccatgggtgaaagcaacaatttctgagtaaaaaaga 323
Query: 124 cagtaaacgtgattttgtcagagatgtaaatctgaaaacataaagacagaaatgctaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtaaacgtgattttgtcagagatgtaaatctgaaaacataaagacagaaatgctaaag 383
Query: 184 tatatcacaacaaaagggatgcaaataagaaaaactttaagactgaagtatacacctatc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 tatatcacaacaaaagggatgcaaataagaaaaactttaagactgaagtatacacccatc 443
Query: 244 tcagtggtcaggtattagtcaagacaaagcatactataaacatactaaagcttgcttaca 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 tcagtggtcaggtattagtcaagacaaagcatactataagcatactaaagcttgcttaca 503
Query: 304 agtctcactgga 315
||||||||||||
Sbjct: 504 agtctcactgga 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_d23.g1 MSMg01no233_d23.g1 CHROMAT_FILE:
MSMg01no233_d23.g1 PHD_FILE: MSMg01no233_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:55 2005
(285 letters)
>mm_chr9_37241600_37242284
Length = 685
Score = 505 bits (261), Expect = e-147
Identities = 279/285 (97%)
Strand = Plus / Minus
Query: 1 cgtgggcaggaaactggattgtagagacaaactgattggtggagccatgttcctctactc 60
||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 485 cgtgggcaggacactggattgtagagacaaactggttggtggggccatgttcctctactc 426
Query: 61 ttgacctgcttttggtttggaatctgccacagcttcatcttccaccctggaattgagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgacctgcttttggtttggaatctgccacagcttcatcttccaccctggaattgagtag 366
Query: 121 catatagcgctctgagctgtcttcctgtgcaggtgtccccttacatatcagaagcagccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catatagcgctctgagctgtcttcctgtgcaggtgtccccttacatatcagaagcagccg 306
Query: 181 ctgaacgattacatagcctaagagcaatccaaacacttacttgtccacagaacctacagg 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgcacgattacatagcctaagagcaatccaaacacttacttgtccacagaacctacagg 246
Query: 241 atgggaaagccacgatcttttgctccacattcaacatcatttcca 285
|||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 245 atgggaaagccacggtctcttgctccacattcaacatcatttcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
