BAC Information

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BAC

Clone NameMSMg01-235G15
Chromosome9 (Build37)
Map Location 48,530,083 - 48,680,098
singlet/doubletdoublet
Overlap geneZbtb16
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt
Downstream geneHtr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G15.T7 (MSMg01no235_g15.b1)MSMg01-235G15.TJ (MSMg01no235_g15.g1)
ACCAG400995AG400996
length665757
length of high quality
(start - end)
288 (7 - 294)282 (60 - 341)
definitionCHROMAT_FILE: MSMg01no235_g15.b1 PHD_FILE: MSMg01no235_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005CHROMAT_FILE: MSMg01no235_g15.g1 PHD_FILE: MSMg01no235_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,530,083 - 48,530,370)(48,679,818 - 48,680,098)
sequence
TGACACAGGGGAGCTAACCGTGAGCATGCCATGCCATCTGTAAAATGGGA
TCGGAACACCAGGTCCCTCAGCAAGCTCACAAGTGAGTCGAGTGGATTGT
AGAGACAGAGGACCCATACACAATCACCACCCAGCATCCCTTTCAAGCAC
TGCCTTTGTTGCAATTAAACTATGATTGATTTTACTGAGATTCAATGCAA
TGGTATTTGAGGGCCATTTATTTTGTATAAGGTGAGTCTCACGTTTGTAA
AGGCTTATATCAAAGTTCTCTCACACACACACACACTGATTTAATTTTTA
TTGCCCCCCCTCCCCACCAACAGAAAAATCTGTCATAGGACCAATACTTC
ACCACCCACAACAAATCAATTATTCAACTCTGATATCTTCCAGGGATGAG
TCCATATAGCCGCCTGCAATGGGTCTGCTTCTGTATTCTCTCCTGACCTC
CCCAGCACACTGGAAGCTCTACTGGGGTAGACTGGCGCATACAACTGGTC
TGCGAAGGAGACTGCGGGTATTGATACCACTGCCAGGCTGTTACCTGCAG
GGTGTCCAAGTCCTGATTCTACCTTCTGTATTCTCTACATATTCTTTGCA
CAACCTCTAGCATTTGTTTGTCTCTTGTATGGATTCTTGAATCTCAGATT
TAAATATTAATATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTCCAGCCAGGTGACAAGATCCTGAAGATGCTCACATTCC
CACCACCTCTCCAGGGTCCCACTGTCCTTCTTAACCCCTGTGCATGGCCC
TGGGTTCTGGGTGCTTCCTTGCTCCTATTTTACCTTCTACATACCTAGAT
GGTGGAACCAGAGAGAAGGAAGCACAGAGTACTCCAGAAAAAGAACACAT
TTGCTGTCAGGACCCAGGGTCTCATCTATTCTGATATTGTTCATCTGAAA
ATTGTAAGACTTAAATACCCCTCCTGCTCCTCATGTATAATATATTTTTT
GACACACCCCCCCCACGGTAGCATGCTCTTTTAATCCCAGCATTTGGGAA
CCACAGACAGAAGGATCTCCTGGAATCTGAGGGCAGCCTGGCATATATAC
TGAGTTCCAGGCCACCCAAAGATCCATAGTGAGACCTGTCTTAAAAGCAA
TGATGGTGGTGGTGATGATGATGGTGGTGGCGGTGAATACTCTTTCTTTC
CCCTTTTTTTTTTCCCCCTTTTTTATTTTTATTTACTCTTTTTTTTTTTC
CCTTTATTTCTGTTATCCGTCTTACTCTTTTTTCCGTTTTTTTTCTTTCC
TTTCTCACCTTTTTATTTCTTTCTTCCTTATTTTATCCTTCTCTCCTTTA
CATTATACCTCTTCTAACTTTCTTCCCAATCCACCCTTTATGTCTATCTT
TACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g15.b1 MSMg01no235_g15.b1 CHROMAT_FILE:
MSMg01no235_g15.b1 PHD_FILE: MSMg01no235_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:44 2005
         (288 letters)



>mm_chr9_48529883_48530570
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggagctaaccgtgagcatgccatgccatctgtaaaatgggatcggaacaccaggtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 201 aggggagctaaccgtgagcatgccatgccatctgtaaaatgggatcggaagagcaggtcc 260

                                                                       
Query: 61  ctcagcaagctcacaagtgagtcgagtggattgtagagacagaggacccatacacaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagcaagctcacaagtgagtcgagtggattgtagagacagaggacccatacacaatca 320

                                                                       
Query: 121 ccacccagcatccctttcaagcactgcctttgttgcaattaaactatgattgattttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacccagcatccctttcaagcactgcctttgttgcaattaaactatgattgattttact 380

                                                                       
Query: 181 gagattcaatgcaatggtatttgagggccatttattttgtataaggtgagtctcacgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagattcaatgcaatggtatttgagggccatttattttgtataaggtgagtctcacgttt 440

                                                           
Query: 241 gtaaaggcttatatcaaagttctctcacacacacacacactgatttaa 288
           |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaaggcgtatatcaaagttctctcacacacacacacactgatttaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no235_g15.g1 MSMg01no235_g15.g1 CHROMAT_FILE:
MSMg01no235_g15.g1 PHD_FILE: MSMg01no235_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:44 2005
         (282 letters)



>mm_chr9_48679618_48680299
          Length = 682

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccagccaggtgacaagatcctgaagatgctcacattcccaccacctctccagggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctccagccaggtgacaagatcctgaagatgctcacattcccaccacctctccagggtcc 422

                                                                       
Query: 61  cactgtccttcttaacccctgtgcatggccctgggttctgggtgcttccttgctcctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cactgtccttcttaacccctgtgcatggccctgggttctgggtgcttccttgctcctatt 362

                                                                       
Query: 121 ttaccttctacatacctagatggtggaaccagagagaaggaagcacagagtactccagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaccttctacatacctagatggtggaaccagagagaaggaagcacagagtactccagaa 302

                                                                       
Query: 181 aaagaacacatttgctgtcaggacccagggtctcatctattctgatattgttcatctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagaacacatttgctgtcaggacccagggtctcatctattctgatattgttcatctgaa 242

                                                    
Query: 241 aattgtaagacttaaatacccctcctgctcctcatgtataa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattgtaagacttaaatacccctcctgctcctcatgtataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)