BAC Information

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BAC

Clone NameMSMg01-236P12
Chromosome9 (Build37)
Map Location 89,822,787 - 89,823,185
singlet/doubletsinglet
Overlap geneRasgrf1
Upstream geneLOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236P12.T7 (MSMg01no236_p12.b1)MSMg01-236P12.TJ (MSMg01no236_p12.g1)
ACCAG402067AG402068
length733958
length of high quality
(start - end)
608 (45 - 652)---
definitionCHROMAT_FILE: MSMg01no236_p12.b1 PHD_FILE: MSMg01no236_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:40 2005CHROMAT_FILE: MSMg01no236_p12.g1 PHD_FILE: MSMg01no236_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACTTGTTCCACACACACACACACACACACACACACACACACACA
CACTCCTTTCTAGGGAACTTACCCGTAATCCTGTTAGCAACCTAGGACCT
CTATCTGCCCTGGTCTGCATACACAACCCGCTCTAAAGAAGGCAATGTTG
TCTCTCCTTTCCTTAACAACTGCCACACCCACTCCAGTGGAAACTGTGAC
AGGTGCAAAAGCTTGGACGCAGTTCTGAAGCAAAAGGTCTTCTGGAGTCT
TGACATCCTGTAGCACGAATGCTCCAAACTTGTCCCTATGTCAGTCGGTG
AACAGAGCTGTGTGCTGTCCTTCAATATTGTTTTATTATAAGTGCCTCTA
AGGAATGATTTTTGACATATAGCTAAGTTAGATTAGCTTCCACCAGTGTT
CCAATATTCTAGGAAATCGTTGAGCCAACCTTGGGCTTTGATTTTAGTAA
GAGTGCTACTCATTCAGACGAATTGCCTCCCGTGTAGACAGTGAAAGAAA
TCAGGTGTTACAATTTACTGGAAAAGAGCCAGAAAACTCAGGGCTAGCCT
ACAAAGTAAACTTAGAATAACAGCCGAGTCACTCCCATGTGCAGGAATTT
ACAATGGCCTAGGAATAAGGAAGGTTGTGGTCTAACAAGGAAGTAGAGTA
AATACTTAGAACAACAGCTGAGTCATTCCCATC
CCCCAAATTTTTAATGNCAGAAAAGGACGAGGGGGCTGGGGAAAANCTAA
AAAAATGAAAGTGGGNAGCCGGGGGGGNGGNGGGAATCGGAACCGGAANN
GNNNNNNNNNNNGGNTNNCGAAAAAAAGGGGGGNNNNNNNNNNNNNNNNG
NNNNNGNNNNGGGNGNGGNGGGGGTTTTTGCCGGGNGGAGGGGGGGGGGG
GGGGGGGGGGNNGGNGNGGGGGGGGGGGNGGGGGGGGGGGGGATGGGGTG
TTTGGGGTGTGTNTTTTGGGNGGGGGGGGGNGGANGAGAAAGGGAGGAGG
GAGGGGGGAAAGAGANGAGAGGAGTTTTTTTGGAAGGGGGGAGGGGNAGA
GGAGAGGAGAGAGAGGGGGAAATAGANNNGGGTGGATGGAGGAGGGGGGG
AGTTAAAGTGGGGTTAGAGGAGGGAGGGAAAAGAGGGAAAAAGGGGAGGG
AATATTTTTTTTTTTGTACCGCCCACAGACCGGGGAGAAAAAGGGGAGGG
AAAGGGGGGAGGGGGGGGGGGAGGGGCCCGCAGAAAAAAAAAAAGAAAGA
AAAGAGGGGGGGGGGGGGGGGGCGGGGGNNANCCCACAAGCGACGGGCGG
GAGAGAGAGGGAAAGTGAGGAGAGAAAGGGAGGAGAGGAGGGGGGGGGGG
GGAGGAGGAAGAGAGGGGAAGGGAGAAGAAGAGAAGGGGAGGGGAGAAGA
GAAGAGGAGGAAGGAAAAAGAAAAGGAAGGAAGAAGAAGGGGAAGGGGGA
GGGCCGGGCGTAGAGAGAGAAAGGAGGGGAAAGGGGAAGAGGGGGAGGAG
AGAGGGAAGAGAGGGGGGAAGGAGAGGAGAGGAGGGGAGAGGGAAAGTAT
TATAGATGGGGTGAGAGNGGGGGGGAGAGAAGGGAAGAGAGGAAGAGGGG
TAGAAAGAGGGGGAGAAGAGGGGGGAGGGAGGGTAAGGAGAGGGAGGGGA
GAGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_p12.b1 MSMg01no236_p12.b1 CHROMAT_FILE:
MSMg01no236_p12.b1 PHD_FILE: MSMg01no236_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:40 2005
         (608 letters)



>mm_chr9_89822787_89823794
          Length = 1008

 Score =  748 bits (387), Expect = 0.0
 Identities = 396/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 37  cacacacacacacacacacacactcctttctagggaacttacccgtaatcctgttagcaa 96
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 399 cacacacacacacacacacacactcctttctagggaacttacctgtaatcctgttagcaa 340

                                                                       
Query: 97  cctaggacctctatctgccctggtctgcatacacaacccgctctaaagaaggcaatgttg 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctaggacctctatctgccctggtctgcatacacaacccgctctaaagaaggcaatgttg 280

                                                                       
Query: 157 tctctcctttccttaacaactgccacacccactccagtggaaactgtgacaggtgcaaaa 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctctcctttccttaacaactgccacacccactccagtggaaactgtgacaggtgcaaaa 220

                                                                       
Query: 217 gcttggacgcagttctgaagcaaaaggtcttctggagtcttgacatcctgtagcacgaat 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcttggacgcagttctgaagcaaaaggtcttctggagtcttgacatcctgtagcacgaat 160

                                                                       
Query: 277 gctccaaacttgtccctatgtcagtcggtgaacagagctgtgtgctgtccttcaatattg 336
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 159 gctccaaacttgtccctatgtcagtcggtgaacagagctgtgggctgtccttcaatattg 100

                                                                       
Query: 337 ttttattataagtgcctctaaggaatgatttttgacatatagctaagttagattagcttc 396
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 99  ttttattataagtgcctctaaggaatgacttttgacatatagctaagttagattagcttc 40

                                                  
Query: 397 caccagtgttccaatattctaggaaatcgttgagccaac 435
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  caccagtgttccaatattctaggaaatcgttgagccaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)