Query= MSMg01no237_l16.b1 MSMg01no237_l16.b1 CHROMAT_FILE:
MSMg01no237_l16.b1 PHD_FILE: MSMg01no237_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:37 2005
(458 letters)
>mm_chr9_27305898_27306755
Length = 858
Score = 762 bits (394), Expect = 0.0
Identities = 441/462 (95%), Gaps = 10/462 (2%)
Strand = Plus / Minus
Query: 1 actctccatcaaagagaccatcctctcccacactgcaaggaaaaacactcccctgagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 actctccatcaaagagaccatcctctcccacactgcaaggaaaaacactcccctgagaga 540
Query: 61 cctcagcttttccccacagtcctgctctctcctatgcgcagaagttccccaaattcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cctcagcttttccccacagtcctgctctctcctatgcgcagaagttccccaaattcccaa 480
Query: 121 tgaagcaacggttgaccagcaagccatgcctgcttttaagggagtcaagatcccgggcgg 180
|||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct: 479 tgaagcaatggttgaccagcaggccatgcctggttttaagggagtcaagatcctgggcgg 420
Query: 181 ttacctggagacactgcgcgcttttagtgacactgggattcaggcctctgttatgtttga 240
|||||||||||||||| || ||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 419 ttacctggagacactgtgcacttttagggacactggggttcaggcctctgttatgtttga 360
Query: 241 cagttttaatttggtgcctgcactaaaggttggcaaacatatggtgactgactttgtaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cagttttaatttggtgcctgcactaaaggttggcaaacatatggtgactgactttgtaaa 300
Query: 301 tggctgacattggacatgcaagagaaagatgaatgaaagcacatgcaactgcctgaaatc 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 299 tggctgacattggacatgcaagagaaagacgaatgaaagcacatgcaactgcctgaaatc 240
Query: 361 acctacaaaacttaattttatgaagtataa--------aaggtaaaatgttctctatgaa 412
|||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 239 acctacaaaacttaattttatgaagtataataggtaaaaaggtaaaatgttctccatgaa 180
Query: 413 ccaaaaatacaagagaagaggaaggaggggaggggagaggag 454
|||||||||||||||||||||||||||| |||| |||||||
Sbjct: 179 ccaaaaatacaagagaagaggaaggaggagagg--agaggag 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_l16.g1 MSMg01no237_l16.g1 CHROMAT_FILE:
MSMg01no237_l16.g1 PHD_FILE: MSMg01no237_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:37 2005
(180 letters)
>mm_chr9_27148079_27148658
Length = 580
Score = 325 bits (168), Expect = 1e-93
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 9 gaattcaggtccttggttttcttttcaggcaacacaaagaacattgtccaagttaagaag 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcaggtccttggttttcttttcaggcaacacaaagaacattgtccaagttaagaag 268
Query: 69 gggtgatgtgggctccctctaaaatcccttctagctgctgctttgggggaagatctctgg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gggtgatgtgggctccctctaaaatcccttctagctgctgctttgggggaagatctctgg 328
Query: 129 gtagagttgggttaggggaagagaaggggattggacactggcatattg 176
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtagagttgggttaggggaagagaaggggattggacactggcatattg 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space: 98384
Effective search space used: 98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
