Query= MSMg01no260_a22.b1 MSMg01no260_a22.b1 CHROMAT_FILE:
MSMg01no260_a22.b1 PHD_FILE: MSMg01no260_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:02 2005
(541 letters)
>mm_chr9_31661399_31662339
Length = 941
Score = 969 bits (501), Expect = 0.0
Identities = 528/537 (98%), Gaps = 2/537 (0%)
Strand = Plus / Minus
Query: 6 ggaattcccatagaagtgccactttacttatttctagtttttgagattggaacatacatt 65
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaattcccatagaagtgtaactttacttatttctagtttttgagattggaacatacatt 682
Query: 66 ttatagagtacaagggtgaagatcaaaggcttggatgttcaggttcatttcagagagaga 125
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ttatagagtacaagggtgaagatcaaaggcttggatgttcaggtgcatttcagagagaga 622
Query: 126 atgaatttgggatgagggaggactctctccatgttctt-acgtgtggccactatttctgt 184
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 621 atgaatctgggatgagggaggactctctccatgtt-ttcacgtgtggccactatttctgt 563
Query: 185 tttccagtcctacacagaaggttctcagaagggagacatgcttcctcttggcgatggtct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttccagtcctacacagaaggttctcagaagggagacatgcttcctcttggcgatggtct 503
Query: 245 gggtgaatggtggcagcctgagatttagtagcaagtgccaggtgctagccagcatgtccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 502 gggtgaatggtggcagcctgagatttagtagcaagtgccaggtgctagccagcatgttcc 443
Query: 305 cacctctctcactctctcccctcttcctcacccttcttttgtgtctcatacctttcaggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacctctctcactctctcccctcttcctcacccttcttttgtgtctcatacctttcaggt 383
Query: 365 tggacttggcccaccctctgggactcactcagctgcaagtgaagacttggtatcagaatc 424
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggacttggcccagtctctgggactcactcagctgcaagtgaagacttggtatcagaatc 323
Query: 425 gcaggatgaaatggaagaagatggtaagaaagggcaaggagtgtaattctgggcccgttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaggatgaaatggaagaagatggtaagaaagggcaaggagtgtaattctgggcccgttc 263
Query: 485 taatgggaagaatttccagtctgtggctgttgggaggcaggaaggatctctggtagt 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taatgggaagaatttccagtctgtggctgttgggaggcaggaaggatctctggtagt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_a22.g1 MSMg01no260_a22.g1 CHROMAT_FILE:
MSMg01no260_a22.g1 PHD_FILE: MSMg01no260_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:02 2005
(504 letters)
>mm_chr9_31504482_31505385
Length = 904
Score = 897 bits (464), Expect = 0.0
Identities = 494/504 (98%)
Strand = Plus / Plus
Query: 1 aattaagacacgaatgtgaatggcctgccagaaaacaactcatgacagcaattagaataa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 aattaagacacgaatgtgaatggcctgccagaaaacagctcatgacagcaattagaataa 260
Query: 61 tgatcaggactggagtgacagaaagagtgttggggctggtagtgatgggcttctgttcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcaggactggagtgacagaaagagtgttggggctggtagtgatgggcttctgttcca 320
Query: 121 agggatgggacatgaggggctctcctccatagcagagctatctacaggtggaagcggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggatgggacatgaggggctctcctccatagcagagctatctacaggtggaagcggggt 380
Query: 181 gttggtgatccccgtcacttagctatattgtcacactgaaggcattcatttaataattta 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggtgatcccagtcacttagctatattgtcacactgaaggcattcatttaataattta 440
Query: 241 caggaaggagtggacattccaagctacgagagtcctgctcttatggtgcccatgttctag 300
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 caggaaggagtggacgttccaagctatgagagtcctgctcttatggtgcccatgttctag 500
Query: 301 tgagttgtagaaccaacccgggttgtggcagacgtagcacagctcccttgtggtgcccac 360
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tgagttgtagaaccaaccagggttgtggcagacgtagcacagctcttttgtggtgcccac 560
Query: 361 cttcactgctttaagctaccacacacactgcctcaagaaagaataaaggaaggcaatgcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcactgctttaagctaccacacacactgcctcaagaaagaataaaggaaggcaatgcg 620
Query: 421 cagtctcccatagttttcctactatcaaacactagccagcttaaaagagtcccgttcccc 480
|||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct: 621 cagtctcccatagttttcttactatcaaacactagacagcttaaaagagtcctgttcccc 680
Query: 481 aagcctactatgtttttttctctg 504
||||||||||||||||||||||||
Sbjct: 681 aagcctactatgtttttttctctg 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
