BAC Information

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BAC

Clone NameMSMg01-261G14
Chromosome9 (Build37)
Map Location 20,170,714 - 20,171,206
singlet/doubletsinglet
Overlap geneZfp560
Upstream geneOlfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18
Downstream gene4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261G14.T7 (MSMg01no261_g14.b1)MSMg01-261G14.TJ (MSMg01no261_g14.g1)
ACCAG403807AG403808
length718715
length of high quality
(start - end)
628 (49 - 676)491 (79 - 569)
definitionCHROMAT_FILE: MSMg01no261_g14.b1 PHD_FILE: MSMg01no261_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:47 2005CHROMAT_FILE: MSMg01no261_g14.g1 PHD_FILE: MSMg01no261_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCGCCTATACTCCATCATAGAACCTTCACAGAACCAAGGGCCTC
TCCTCCCATTGATGACCAACTAGGCCATCCTCTGCTACATATGCAGCTAG
AGCCATGAGTCCAACCATTAACATAATCCACTATATAAACAATCTCAAAG
AAAAAAATCACATGATCATCTCCTTAGATGCAGAAAACGCATTTGACAAA
ATATAACACCCCTTCATGTTAAAAGTATTGGAGAGATTGGGAATTCAAGA
CCCATACCTAAACATAATAAAAGCAATTTACTGCAAGCCAACAGCCAATA
TCAAATTAAATGGAGACATTCTTGAAGCAATCCCACTAAAACTGGGGACA
AGACAGGATGCCCACTCTCCCCATATCTATCCAATATAGTATTCAAAGTG
TTAGCTAGAACAAAAGGACAACAAAAAGAGATCAAAAGGATACAAATTGA
TAAAGAATAAATAAAGGTATTACCACTTGCAGGTGATATGATAGTATGCA
TAAGGGATTCTACCAGAGAACTTCTCCAGGTGATAAGCAACTTCAGCCAA
GTGGCCAGATATAAAATTAACTCAATCATAAGACAAAAAGGCCACCAACA
GATTGGGAAAGGATCTTTACCTATCTTAAATCAGATAGGGGACTAATATC
CAATATATATAAAGAACT
CACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTAAGGGATGTCTTTCCT
CATTTGTAGTGAATTTAGTGTGTCCTAATTCCCAGCCAGAACCTATATTC
CAGTAAAGTCTCTTTTGGCTCTAGCATTTGGCCAGTTTTGATTAATCTAT
TGTGAATATTGGTATAATTTGGATAAAAAGAGTTACCCTCAAATCTTGGA
ATATCTTATAAAAGAGTCAATAAAGTAAAGGCCACTCCCAGTAGGCAGAA
GTCTGTGTGTGCCATAGGGCTTCCTAGAGCCTTCCATTTCTGAGGGTAGT
ATTTACATCACTTGGAAACTGTGTCCACCAGGTTACTCCTATGAACTGGA
GTGCATGTGATTGGTAAGTATGATTAGGATATCCAGCTACACTTATAGGG
AAAATGACTATCAGGGCAGGTTATGCTGTGGCAGGAAACTTGGGCAGCTG
CAATAGATTGAATGTTATATCTAGGACTTTGTTGTTTTTTCTCATTTCCT
ACATCAGTGGCAATGCAGTAGTCTCAATTGGTTGGATCCAGTTAGACTTT
CCCTCCTCTCTCCTTAATGGGAAACATTTCTATTGCTTTGGGTGCAAGGA
TTATAGATCTAACTCTATAAAGGGAATTCTCTTGGGTATTTCTTTTAGAC
CAGATCTTGCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_g14.g1 MSMg01no261_g14.g1 CHROMAT_FILE:
MSMg01no261_g14.g1 PHD_FILE: MSMg01no261_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:48 2005
         (491 letters)



>mm_chr9_20170545_20171435
          Length = 891

 Score =  797 bits (412), Expect = 0.0
 Identities = 471/494 (95%), Gaps = 8/494 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctaagggatgtctttcctcatttgtagtgaatttagtgtgtcctaattcccagcca 60
           ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 662 ttttctaagagatatctttcctcatttgtagtgaattcagtgtgtcctaatttccagcca 603

                                                                       
Query: 61  gaacctatattccagtaaagtctcttttggctctagcatttggccagttttgattaatct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcacctatattccagtaaagtctcttttggctctagcatttggccagttttgattaatct 543

                                                                       
Query: 121 attgtgaatattggtataatttggataaaaagagttaccctcaaatcttggaatatctta 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 attgtgaatattggtacaatttggataaaaagagttaccctcaaatcttggaatatctta 483

                                                                       
Query: 181 taaaagagtcaataaagtaaaggccactcccagtaggcagaagtctgtgtgtgccatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 taaaagagtcaataaagtaaaggccactcccagtaggcagaagtctgtgtgtgccatagg 423

                                                                       
Query: 241 gcttcctagagccttccatttctgagggtagtatttacatcacttggaaactgtgtccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcttcctagagccttccatttctgagggtagtatttacatcacttggaaactgtgtccac 363

                                                                       
Query: 301 caggttactcctatgaactggagtgcatgtgattggtaagtatgattaggatatccagct 360
           || ||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 362 caagttactcctgtgaactggagtgtgtgtgattggtaagtatgattaggatatccagct 303

                                                                       
Query: 361 acacttatagggaaaatga-ctatcagggcaggttatgctgtggcaggaaacttgggcag 419
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| 
Sbjct: 302 acacttatagggaaaatgatc-atcagggcaggttatgctgtggcaggaaacttgggcaa 244

                                                                       
Query: 420 ctgcaatagattgaatgttatatctaggactttgttgtttttt------ctcatttccta 473
           |||||||||||||||  |||||||||||| |||||| ||||||      |||||||||||
Sbjct: 243 ctgcaatagattgaacattatatctaggagtttgtttttttttttttttctcatttccta 184

                         
Query: 474 catcagtggcaatg 487
           ||||||||||||||
Sbjct: 183 catcagtggcaatg 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)