Query= MSMg01no262_p23.b1 MSMg01no262_p23.b1 CHROMAT_FILE:
MSMg01no262_p23.b1 PHD_FILE: MSMg01no262_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:47 2005
(568 letters)
>mm_chr9_87195495_87196469
Length = 975
Score = 919 bits (475), Expect = 0.0
Identities = 544/569 (95%), Gaps = 7/569 (1%)
Strand = Plus / Plus
Query: 7 gaattcttacccatatcccttaaag-aacatgatgacactgtcagtctgcttgtgtgcct 65
||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| |||
Sbjct: 207 gaattcttacccagatctcttaaagcaacatgatgacactgtcagtctggttgtgtacct 266
Query: 66 tcagtttctgaaaa-acaattttaaacattataatggagact--tatgtttgcacagttg 122
|||||||||||||| | ||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 267 tcagtttctgaaaatataattttaaatattataatcgagactattatgtttgcacagttg 326
Query: 123 tctttgtttatttagttgtttgcaagaaatatatttttcccatgtaaagaaatactagca 182
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctttgcttatttagttgtttgcaagaaatatatttttcccatgtaaagaaatactagca 386
Query: 183 gggatgtgtctgcacaggaattctgatagagaaaaaaagtctctcctcctttaaataacc 242
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 387 gggatgtgtctgcacaggaattctgatagagaaaaaaagtctctcctcctttcaataaca 446
Query: 243 ctgatttttagtgatcgaatccaaaggtttgttcactgaaacttacctgtgtctgttcac 302
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgattttgagtgatcgaatccataggtttgttcactgaaacttacctgtgtctgttcac 506
Query: 303 tgggacaaatcc---gtggttcgctcctgacatagataccacttagcttcttggtaatat 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgggacaaatccatcgtggttcgctcctgacatagataccacttagcttcttggtaatat 566
Query: 360 tcccatgtcattgactcaacagagaacagtggagatgcagttgactttgagtcggcagct 419
|||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 567 tcccatgtcattgattcaacagagaacagtggagatgcagttgactttgattgggcagct 626
Query: 420 gtcaccccatggccctcatggaacacccaacacagcagctccaatggtcagttctgcccc 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtcaccccttggccctcatggaacacccaacacagcagctccaatggtcagttctgcccc 686
Query: 480 tgtgcctaaacctagggcagtttactgaaagtaacaacaggtgttggcaactctgctttc 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 687 tgtgcctaaacctagggcagtttagtgaaagtaacaacaggtgttggcaactctgctttc 746
Query: 540 tagaaactgtatgcacatgttgtgtagtt 568
|||||||||||||||||||||||| ||||
Sbjct: 747 tagaaactgtatgcacatgttgtgcagtt 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 975
Length adjustment: 10
Effective length of query: 558
Effective length of database: 965
Effective search space: 538470
Effective search space used: 538470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_p23.g1 MSMg01no262_p23.g1 CHROMAT_FILE:
MSMg01no262_p23.g1 PHD_FILE: MSMg01no262_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:47 2005
(657 letters)
>mm_chr9_87361898_87362954
Length = 1057
Score = 1091 bits (564), Expect = 0.0
Identities = 582/594 (97%), Gaps = 10/594 (1%)
Strand = Plus / Minus
Query: 64 ccagaaacacataaaaaacatcatccactatgatcaaataggcttcatccaagggatgca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 ccagaaacacataaaaaacatcatccactatgatcaaataggcttcatccaagggatgca 998
Query: 124 gaggtggtttaatttatgaaaatccatcaacaaaatccatcatataaacaaatagaaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 gaggtggtttaatttatgaaaatccatcaacaaaatccatcatataaacaaatagaaaga 938
Query: 184 aaaaactcacatcattgactcataagaacctgtggtgtaagtatttttatcattagtgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aaaaactcacatcattgactcataagaacctgtggtgtaagtatttttatcattagtgtt 878
Query: 244 gcaaacatgaaaaaaaaagaactatctggacatgagaaggctaactaaaatgcccaatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 877 gcaaacatgaaaaaaaaagaactatctggacatgagaaggctaactaaaatgcccaaagt 818
Query: 304 cacactgcttgtaatggacagagttggggcttgaacccaggccacctcacctcttcacca 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 817 cacactgcttgtaatggacagagttggggcttgaactcaggccacctcacctcttcacca 758
Query: 364 gaacattatgcccagaacaaaataagcagcctagggactactgctgaatcctgtttaata 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaacattatgcccagaacaaaataagcagcctagggactactgctgaatcctgtttaata 698
Query: 424 gcatgctattagctttgcaaattgtcagggatactacaacttttccaaaataaaaatgaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gcatgctattagctttgcaaattgtcagggatactacaacttttccaaaataaaaatgaa 638
Query: 484 aaatatacccacttgctgccttccacaacacaaacttataaaaatgtccacaattcaaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaatatacccacttgctgccttccacaacacaaacttataaaaatgtccacaattcaaaa 578
Query: 544 tgtcatgaagaaggaatactaatatatatatatatatatatatatatatatatatatata 603
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 577 tgtcatgaagaaggaatacta----------atatatatatatatatatatatatatata 528
Query: 604 tatatatatggacacatcgatcactatatgttgcatacattaggaaaaaaaaca 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tatatatatggacacatcgatcactatatgttgcatacattaggaaaaaaaaca 474
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 565 atatatatatatatatatatatatatatatatatatat 602
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 567 atatatatatatatatatatatatatatatatatatat 604
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 569 atatatatatatatatatatatatatatatatatatat 606
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 571 atatatatatatatatatatatatatatatatatatat 608
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 573 atatatatatatatatatatatatatatatatatatat 610
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 575 atatatatatatatatatatatatatatatatatatat 612
||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatat 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 9
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
