Query= MSMg01no263_a18.b1 MSMg01no263_a18.b1 CHROMAT_FILE:
MSMg01no263_a18.b1 PHD_FILE: MSMg01no263_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:51 2005
(299 letters)
>mm_chr9_47282077_47282773
Length = 697
Score = 495 bits (256), Expect = e-144
Identities = 286/296 (96%), Gaps = 2/296 (0%)
Strand = Plus / Minus
Query: 1 tccaaagacatattccaagtcttctccagaagatggctgggggacccttcccttgccagg 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct: 494 tccaaagacatattccatgtcttctccagaagatggct-ggggacccttcccttgttagg 436
Query: 61 taccaaatgtgaggaattcgtatgaggaggaggggaagcaaagtcaggcagttttgtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taccaaatgtgaggaattcgtatgaggaggaggggaagcaaagtcaggcagttttgtaag 376
Query: 121 aggtaggtcccacaagtcagaatagacaggaatggtctccatgatctggagcaggtagta 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aggtaggtcccacaagtcagcatagacaggaatggtctccatgatctggagcaggtagta 316
Query: 181 gagcctctcagaagccataggactcactcactaagctttctaaagatgtaagcagtaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 315 gagcctctcagaagccataggactcactcactaagctttctaaagatgtaagcagtagga 256
Query: 241 ccagaattcgaatgtgtattcagctggcttcccataccgcctcctgtttccctctg 296
|||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||
Sbjct: 255 ccagaattcgaatgtg-agtcatctggcttcccatacctcctcctgtttccctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 697
Length adjustment: 9
Effective length of query: 290
Effective length of database: 688
Effective search space: 199520
Effective search space used: 199520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_a18.g1 MSMg01no263_a18.g1 CHROMAT_FILE:
MSMg01no263_a18.g1 PHD_FILE: MSMg01no263_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:51 2005
(501 letters)
>mm_chr9_47173548_47174448
Length = 901
Score = 853 bits (441), Expect = 0.0
Identities = 491/521 (94%), Gaps = 22/521 (4%)
Strand = Plus / Plus
Query: 1 ctaggctctgcatgttggcctgcacactgcacttcactgggtagaggagccacttgcatg 60
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 183 ctaggctctgcatgtcggcctgcacactgcacttcactgggtagaggaggcacttgcatg 242
Query: 61 aactgaatagcaggagccaaggataacttctgcagagactcctccattccaacttaatgt 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 243 aactgaatagcaggagccaaggctaacttctgcagagactcctccattccaacttaatgt 302
Query: 121 tctgtccaacaggagctacagcatggtaaaggaagctctacaggacctgccctagggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tctgtccaacaggagctacagcatggtaaaggaagctctacaggacctgccctagggggc 362
Query: 181 tacctatcccatttccactccttcatccaactgacaggatctcggactctctctctctct 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 tacctatcccatttccactccttcatccaactgacaggatctcg--ctctctctctctct 420
Query: 241 ctctctc--------------------atctagaagggacagcagttggctgtctatcca 280
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 ctctctctctctctctctctctctctcatctagaagggacagcagttggctgtctatcca 480
Query: 281 gggaattctagatagaaagtaattccaagcaattataaacctagtcaagagccagaatga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggaattctagatagaaagtaattccaagcaattataaacctagtcaagagccagaatga 540
Query: 341 taccccctgctatgcgctccgtactcccaagcccaccagcccagccagaagaccgtgtta 400
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagcaggtgctatgcgctccgtactcccaagcccaccagcccagccagaagaccgtgtta 600
Query: 401 gcacaagctcttgccaaagaaagaatggcaactatatggttaaagtaggggcgccaatga 460
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtacaagctcttgccaaagaaagaatggcaactatatggttaaagtaggggcgccaatga 660
Query: 461 acaactgctgtggtgccttcaataagctgtccctcatagtc 501
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acaactgctgtggtgccttcaataagctgtccctcatagtc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
