Query= MSMg01no263_k23.b1 MSMg01no263_k23.b1 CHROMAT_FILE:
MSMg01no263_k23.b1 PHD_FILE: MSMg01no263_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:40 2005
(687 letters)
>mm_chr9_11061049_11062136
Length = 1088
Score = 1243 bits (643), Expect = 0.0
Identities = 674/689 (97%), Gaps = 11/689 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcttcctggtctgcc--ca---attggacttttagcagagtttgtatttgctg 58
||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttcctg----gccagcaaatattggacttttagcagagtttgtatttgctg 259
Query: 59 ttgatcagtgctggccttactgccaaaccatctttttagatcaataaatatcctctaaga 118
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttgatcagtgctggccttactgcaaaaccatctttttagatcaataaatatcctctaaga 319
Query: 119 agttcagctaattttctcttcctttcaaactcttaatttgatgctgatattgagtaaaat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agttcagctaattttctcttcctttcaaactcttaatttgatgctgatattgagtaaaat 379
Query: 179 ctattatccaacattttactattcccatcaacaaaggaataagacataattttaatcttg 238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctattatccaatattttactattcccatcaacaaaggaataagacataattttaatcttg 439
Query: 239 atttctatcattctgcagtacatttcaatcacatttgtgcatatgaatatatatgtatat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 atttctatcattctgcagtacatttcaatcacatttgtgcatatgaatatatatg--tat 497
Query: 299 atatatatattctgttaattgaacacaattcttgcttaatatacctctaatattttattt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atatatatattctgttaattgaacacaattcttgcttaatatacctctaatattttattt 557
Query: 359 gtaatattttcaatatccttacaaataggaaatataaattcttaaatgttgaatacatct 418
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtaatattttcaatatccttagaaataggaaatataaattcttaaatgttgaatacatct 617
Query: 419 gaaatcttttcttcttttttcatgagtcttccaatatgtgctgacaacacactgtatttt 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 618 gaaatcttttcttcttttttcatgagtcttccaatatgtgctgtcaacacactgtatttt 677
Query: 479 ctaaattcctctacagttttcattatgttacctctttggacacatttgcaatgataaaat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctaaattcctctacagttttcattatgttacctctttggacacatttgcaatgataaaat 737
Query: 539 atcacattgtgctatgcatatttagggacaaactataaacatatatttctgtcacaattc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcacattgtgctatgcatatttagggacaaactataaacatatatttctgtcacaattc 797
Query: 599 ctgctctcctgaagcaatgtaattctacacagtaatagcaaagagatctatataaaaaat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctgctctcctgaagcaatgtaattctacacagtaatagcaaagagatctatataaaaaat 857
Query: 659 aaaattggttctacagtagttctagatgt 687
|||||||||||||||||||||||||||||
Sbjct: 858 aaaattggttctacagtagttctagatgt 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_k23.g1 MSMg01no263_k23.g1 CHROMAT_FILE:
MSMg01no263_k23.g1 PHD_FILE: MSMg01no263_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:40 2005
(672 letters)
>mm_chr9_11240817_11241888
Length = 1072
Score = 1261 bits (652), Expect = 0.0
Identities = 667/672 (99%)
Strand = Plus / Minus
Query: 1 aacattcttaaaagttattacctgagttttgttcttaaactgctgaagtgcccttaatct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 872 aacattcttaaaagttattacctgagttttgttcttaaactgctgaagtgtctttaatct 813
Query: 61 cctattaaatgatccagggagccagagtgcctttaatctgtctcatgtgctttgttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cctattaaatgatccagggagccagagtgcctttaatctgtctcatgtgctttgttttgt 753
Query: 121 ttttctaaatgaaatatattatttcacttatttatgaggtaggtgctaaaattgtcttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttttctaaatgaaatatattatttcacttatttatgaggtaggtgctaaaattgtcttta 693
Query: 181 ctgaggtaaagaggatagcgaaccagacaagtgtagtgtccaccagaaacaacagaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctgaggtaaagaggatagcgaaccagacaagtgtagtgtccaccagaaacaacagaaaac 633
Query: 241 tagtgacataatagtgttttaaatttggtagtgcagcttcagggacacccatcatgtata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tagtgacataatagtgttttaaatttggtagtgcagcttcagggacacccatcatgtata 573
Query: 301 tcgtcaaacgatgctttccacaaaagaaatgaaaaaaatatgtccaatatcaggtattta 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 572 tcgtcaaacgatgctttccacaaaagaaatgaaaaaaatatatccaatatcaggtattta 513
Query: 361 ttcatgtgctaaacaatgtctcctataaacttctgtacttaatatctaacctacagtatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttcatgtgctaaacaatgtctcctataaacttctgtacttaatatctaacctacagtatt 453
Query: 421 tcagaagaggagtatgtgatggctactccttttgaagaagttactagataagataagatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcagaagaggagtatgtgatggctactccttttgaagaagttactagataagataagatc 393
Query: 481 ataatagtgtttggtaaataagatacacagatgtgtgtttggaaaaagacactctcagga 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 ataatagtgtttggtaaataagatacatagatgtgtgtttggaaaaagacactctcagga 333
Query: 541 gaagaaacaacaatgacaagtatctgcaaatgaagagagaactcaaaagacagaaaacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 332 gaagaaacaacaatgacaagtatctgcaaatgaagagagaactcaaaagacagaaaatct 273
Query: 601 ggaaacattgtgatccaggatttctagtgttaaaaactatgagaactaaatttattttgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggaaacattgtgatccaggatttctagtgttaaaaactatgagaactaaatttattttgt 213
Query: 661 ttgtcatgctag 672
||||||||||||
Sbjct: 212 ttgtcatgctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
